Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30085
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   107   5e-25
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   107   5e-25
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.2  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   3.8  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   6.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    24   8.7  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  107 bits (258), Expect = 5e-25
 Identities = 52/79 (65%), Positives = 59/79 (74%)
 Frame = +2

Query: 17  MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
           MG VRTKT         EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 197 LRHSQVRGISIKLQEEERE 253
           ++   VRGIS KLQEEERE
Sbjct: 61  IQRGPVRGISFKLQEEERE 79



 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +1

Query: 256 RDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 390
           +D YVPEVS LE D + VD DTKDMLK L ++ I  +++  PA Q
Sbjct: 81  KDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  107 bits (258), Expect = 5e-25
 Identities = 52/79 (65%), Positives = 59/79 (74%)
 Frame = +2

Query: 17  MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
           MG VRTKT         EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 197 LRHSQVRGISIKLQEEERE 253
           ++   VRGIS KLQEEERE
Sbjct: 61  IQRGPVRGISFKLQEEERE 79



 Score = 48.0 bits (109), Expect = 6e-07
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 256 RDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 357
           +D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 81  KDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 153 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 43
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 171 PAILFLRGLVGMIAISSHILLFVSK 97
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 125 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 217
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 203 HSQVRGISIKLQEEERESVTTMSQKCLLSNMTSSK*TPT 319
           + QV       QEE RESV  +  +   +N++ +   PT
Sbjct: 398 NKQVSSNETSAQEEPRESVAALRARFAKANVSENNDPPT 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,928
Number of Sequences: 5004
Number of extensions: 29430
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)