Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30085
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            113   8e-26
10_07_0174 + 13815478-13815903                                        112   1e-25
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374...    29   2.1  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    29   2.1  
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150...    27   4.9  
01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322...    27   4.9  
12_02_0349 - 17820352-17821238,17822976-17823363                       27   6.4  
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542     27   6.4  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    27   8.5  
03_06_0659 - 35345095-35345135,35345982-35347365                       27   8.5  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  113 bits (271), Expect = 8e-26
 Identities = 51/79 (64%), Positives = 64/79 (81%)
 Frame = +2

Query: 17  MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
           MG VRTKTV        EKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60

Query: 197 LRHSQVRGISIKLQEEERE 253
           ++   VRGIS+KLQEEERE
Sbjct: 61  IQRGPVRGISLKLQEEERE 79



 Score = 33.9 bits (74), Expect = 0.056
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 256 RDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 381
           R ++VP+ SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 81  RMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  112 bits (270), Expect = 1e-25
 Identities = 51/79 (64%), Positives = 63/79 (79%)
 Frame = +2

Query: 17  MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
           MG VRTKTV        EKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60

Query: 197 LRHSQVRGISIKLQEEERE 253
           ++   VRGIS+KLQEEERE
Sbjct: 61  IQRGPVRGISLKLQEEERE 79



 Score = 34.7 bits (76), Expect = 0.032
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +1

Query: 256 RDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGY 399
           R ++VPE SALE + I VD +T +ML  L   ++ G++  Q  +   Y
Sbjct: 81  RMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAPTY 128


>05_05_0301 +
           23936126-23936267,23937101-23937174,23937338-23937421,
           23937502-23937582,23938304-23938384,23938503-23938595,
           23939094-23939270,23939838-23939927,23940859-23940925,
           23941218-23941309
          Length = 326

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 178 HTFNEASQTLASARNLYQTSGRGA*ERDNYVPEVSALEH 294
           H F + S+    A NL+   G+G  E +  VPE+SALEH
Sbjct: 206 HGFLDVSKV---AGNLHFAPGKGFYESNINVPELSALEH 241


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 280 TLLGHSCHALTLLFLKFDRDS 218
           T+LG+SCH  TLL+L+  + S
Sbjct: 927 TVLGNSCHGTTLLYLRSQKAS 947


>04_04_0448 -
           25314042-25314183,25314271-25314321,25314437-25315033,
           25315151-25315353
          Length = 330

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 404 PP*PPWVAGCVSCR----PLILLKSSIFNISLVSGSTSMMSC 291
           PP PP     VS R    PL+ L+ +  N S VSGS S  +C
Sbjct: 5   PPSPPRSLTSVSLRTPLSPLLFLRPASCNPSAVSGSCSSGAC 46


>01_01_0425 +
           3221303-3222602,3222710-3222928,3223010-3223114,
           3223274-3223403,3223524-3224464,3224971-3225257
          Length = 993

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 401 P*PPWVAGCVSCRPLILLKSSIF 333
           P PPW+  C S   L+L   S +
Sbjct: 387 PIPPWIRNCTSLESLVLFNCSFY 409


>12_02_0349 - 17820352-17821238,17822976-17823363
          Length = 424

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 190 EASQTLASARNLYQTSGRGA*ERDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQ 369
           EA+ T A+A + +  +G G    +NY   V  L   +    PD  ++LK+    N  G +
Sbjct: 294 EAAATAAAATD-HDAAGDGG-GGNNYQSLVDFLPGSVFSSSPDLANLLKLYTEGNGGGRR 351

Query: 370 LT 375
           LT
Sbjct: 352 LT 353


>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
          Length = 138

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 404 PP*PPWVAGCVSCRP 360
           PP PP   GC SCRP
Sbjct: 97  PPPPPCCPGCNSCRP 111


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 DTKDMLKMLDFNNINGLQLTQPATQ 390
           DTKDMLK +D+  + G  +T   +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621


>03_06_0659 - 35345095-35345135,35345982-35347365
          Length = 474

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 363 PATNTASYPGWLW 401
           PATN A YPG LW
Sbjct: 370 PATNDAPYPGKLW 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,167,912
Number of Sequences: 37544
Number of extensions: 181592
Number of successful extensions: 479
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)