Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30085
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   112   1e-25
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    30   0.81 
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  112 bits (269), Expect = 1e-25
 Identities = 53/79 (67%), Positives = 60/79 (75%)
 Frame = +2

Query: 17  MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
           M  VRTKTV        EKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR
Sbjct: 1   MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRR 60

Query: 197 LRHSQVRGISIKLQEEERE 253
           +    VRGISIKLQEEERE
Sbjct: 61  IERGPVRGISIKLQEEERE 79



 Score = 37.1 bits (82), Expect = 0.005
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 256 RDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 351
           RDNY+PE+S ++      I+VD DT DMLK   FN
Sbjct: 81  RDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +1

Query: 169 WICHTFNEASQTLASARNLYQTSGRGA*ERDNYVPEVSALEHDIIEVDPDTKDMLKMLD 345
           W CH FN A   ++ A+ L Q     A   + +   V  L     E      + LK LD
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAAKIEEAFPEAVKLLNSKKFEAYSIIVNNLKPLD 208


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 326 SLVSGSTSMMSCSRADTSGT*LSRSHAPLPEV 231
           S  SGST  +  + A TSG+ L+ + AP P V
Sbjct: 614 STSSGSTVTVGSTEASTSGSSLATTSAPKPSV 645


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 326 SLVSGSTSMMSCSRADTSGT*LSRSHAPLPEV 231
           S  SGST  +  + A TSG+ L+ + AP P V
Sbjct: 821 STSSGSTVTVGSTEASTSGSSLATTSAPKPSV 852


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 319 TKDMLKMLDFNNINGLQL 372
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


>Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical
           protein T07G12.10 protein.
          Length = 584

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 104 TNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERE--SVTTMSQK 277
           + KR  E +  + T    NK+  F+T  +   +++  +  ++ L E+  E  S    + K
Sbjct: 60  SEKRTIEPVVSLSTTLATNKLPRFSTPAVGHSKYNSAKNFTLNLAEKLSEILSDDDKTDK 119

Query: 278 CLLSNMTS 301
           CL ++  S
Sbjct: 120 CLENSYQS 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,769,829
Number of Sequences: 27780
Number of extensions: 161600
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)