Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30084
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 429  QLSQLCTCTYVDPFRVRSVCVNKDKKELRAGGSRSIVKSRSSHLNIITP*D 581
            QLS+L +  Y DP  +R V   K  KE+   G + +  S S + +  TP D
Sbjct: 2615 QLSELSSTDYCDPSLIRKVLGVKSSKEISL-GEKDVTTSESVYTSRSTPSD 2664


>SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 60  YRTMLPARRNRVSHLRC 110
           Y+TM+  +RNR+SH+ C
Sbjct: 141 YKTMISGQRNRISHIAC 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,664,899
Number of Sequences: 59808
Number of extensions: 352214
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)