Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30084
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82058-5|CAI46585.1|  309|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical...    28   5.3  
U97003-6|AAB52273.1|  402|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z82058-5|CAI46585.1|  309|Caenorhabditis elegans Hypothetical
           protein T27C5.12 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 279 QKTDDSCVNFVEGTGGYVFSSTNFEK--LNAPQQKQFIQTAANTITHKLLSEQLSQLCTC 452
           +K + S  N  EG+  ++    N+ K  + AP+ K  +     +++  LLS  +  +C  
Sbjct: 32  KKFNTSVNNVSEGSNDFIVPFINYTKYFITAPRNKIIMCGIRKSMS--LLSTNI--MCLL 87

Query: 453 TYVDPFRVRSVCVNKDKKELRA 518
             VDPF   +  +N+D K  R+
Sbjct: 88  NNVDPFFANNDALNEDWKVERS 109


>AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical
           protein Y39A1A.13 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 321 GGYVFSSTNFEKLNAPQQKQFIQTAANTITH 413
           G +VF   + +KL  PQQ++F+ T  +  TH
Sbjct: 101 GYFVFLVRDADKLITPQQQKFLYTMVDKATH 131


>U97003-6|AAB52273.1|  402|Caenorhabditis elegans Hypothetical
           protein F47C10.8 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -2

Query: 261 FQIFSLFLLAKQHDGMLTESNDLIQILSTSNLE--VGCGRDQRCRNRHVL 118
           F   SL  L K  D  + E   L   LSTSN      CGRD  C N  VL
Sbjct: 37  FSFCSLISLFKMED--IDELPSLAMELSTSNAPKCTICGRDASCHNYGVL 84


>Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical
           protein F42G4.2 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 354 KLNAPQQKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSV-CVNKDKK 506
           KL+  +  +   T+  T+   L + + SQL TC +   F ++ V C++ D+K
Sbjct: 347 KLSQDKAIETTATSTMTVLPNLKASETSQLKTCEFGVTFNLKHVICLSYDRK 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,732
Number of Sequences: 27780
Number of extensions: 256032
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)