Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30083
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    29   0.79 
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   5.6  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   7.4  

>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 72  IKCICTVNTIFFFITHINKFIIF 4
           +KC+C++ T++F I +I  F+ F
Sbjct: 463 LKCVCSMVTLYFIIFNIAAFVTF 485


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 300 LNCYYVLHVAGRFNYLHSSGNYDLSVKSMIRFISSFLGCVDIER 431
           +N YY   V  + N+LH SG      +  +  I     C+D +R
Sbjct: 232 VNPYYDSFVRWQVNHLHDSGKIKFGERYTVYSIKDGQPCMDHDR 275


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 261 SCSCTKHFSVH 293
           +C C KHFSVH
Sbjct: 113 NCGCPKHFSVH 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,015
Number of Sequences: 5004
Number of extensions: 48641
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)