Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30082
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2R8S1 Cluster: ATP-dependent protease La, putative; n=...    36   0.96 
UniRef50_UPI0001552FC9 Cluster: PREDICTED: hypothetical protein;...    36   1.3  
UniRef50_Q16976 Cluster: Noninactivating potassium channel; n=1;...    34   2.9  
UniRef50_Q89VW6 Cluster: Blr0929 protein; n=5; Bradyrhizobium|Re...    33   5.1  
UniRef50_A3YG00 Cluster: Transcriptional regulator; n=2; Proteob...    33   5.1  
UniRef50_UPI0000F1FCFE Cluster: PREDICTED: similar to zinc finge...    33   6.7  
UniRef50_Q0RMD8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  

>UniRef50_Q2R8S1 Cluster: ATP-dependent protease La, putative; n=3;
           Oryza sativa|Rep: ATP-dependent protease La, putative -
           Oryza sativa subsp. japonica (Rice)
          Length = 284

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 25/75 (33%), Positives = 39/75 (52%)
 Frame = -2

Query: 373 TPYHLVTIHDLTSQVQHSRAVIRTDRPTIPAI*DGILLPHQPAVISLS*RRCRSGRAYST 194
           +P    ++H   ++ +H RAV+R   P+ PA  D  LLP QPA + +    C++   Y  
Sbjct: 11  SPSSPASLHARATRRRHPRAVVRCSSPS-PASLDLPLLPFQPAEVLIP-SECKTLHLYEA 68

Query: 193 LSVAHLHIELLHRQN 149
             +A L  E L+R N
Sbjct: 69  RYLALLE-EALYRTN 82


>UniRef50_UPI0001552FC9 Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 52

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 491 LICPCP*CACNRIPMLTNTSLYRRARARTVLPTRSGPSSNALPPRN 354
           + C  P  + N  P+L NTS  RR RA  +L  + GP    + PRN
Sbjct: 5   VFCLDPRASGNPEPLLFNTSALRRQRALGLLDHQGGPEHGTISPRN 50


>UniRef50_Q16976 Cluster: Noninactivating potassium channel; n=1;
           Aplysia californica|Rep: Noninactivating potassium
           channel - Aplysia californica (California sea hare)
          Length = 577

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 455 IPMLTN--TSLYRRARARTVLPTRSGPSSNALPPRNHSRFNVSGTTFTGRDKNRQTNNSG 282
           IP+++N  T  YR  ++R  +P   G  S+      +S F  S T  T  D N  T  +G
Sbjct: 454 IPVISNNFTLFYRHVQSRAAIPRSRGGDSSECDSNFNSEFERSVTRKTSNDSNVLTFVNG 513

Query: 281 HL 276
           H+
Sbjct: 514 HV 515


>UniRef50_Q89VW6 Cluster: Blr0929 protein; n=5; Bradyrhizobium|Rep:
           Blr0929 protein - Bradyrhizobium japonicum
          Length = 563

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +1

Query: 142 HLGFVDAEVRYANERRRELNKLDRTGTSVTIMILLPVGAVIVYHLKWPELLVCLFLSRPV 321
           H   +D+ V  AN++  ++ KL     S  + ILL V A ++  +    L V L + RP+
Sbjct: 159 HRAVIDSIVESANKQNADMEKLAAERDSTMLYILLGVSAAVLAFVAAGLLGVALGVVRPI 218

Query: 322 NVVPETLNR 348
             + +T+ R
Sbjct: 219 VRMTDTMQR 227


>UniRef50_A3YG00 Cluster: Transcriptional regulator; n=2;
           Proteobacteria|Rep: Transcriptional regulator -
           Marinomonas sp. MED121
          Length = 307

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 484 VLVHDAHATESQCSPTQACIGGLGLGQCYPPGRVLHQTPYHLVTIHDLTSQVQHSRA 314
           VL+ +A  + +Q     + + GL   +  P  R +H TP+H  ++  L  Q + SR+
Sbjct: 171 VLMIEAFRSSTQADTVTSLLAGLADARINPAIRAIHDTPHHPWSVTQLADQARLSRS 227


>UniRef50_UPI0000F1FCFE Cluster: PREDICTED: similar to zinc finger
           homeodomain protein; n=2; Danio rerio|Rep: PREDICTED:
           similar to zinc finger homeodomain protein - Danio rerio
          Length = 1222

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 452 PMLTNTSLY--RRARARTVLPTRSGPSSNALPPRNHSRFNVSGTTFTGRDKNRQTNNSGH 279
           P LT+ +L   RRA     L  R  P +N+       +     TT T  ++ ++T+N+ +
Sbjct: 576 PKLTHQTLLLVRRADGSQSLVVRQMPVTNSNTQATELKSTPEKTTDTATEETKETDNTEN 635

Query: 278 LRWYTITAPTGSNIIIVTEVP 216
                +TAP G  I    E P
Sbjct: 636 CEEQNLTAPIGIQIKTEPESP 656


>UniRef50_Q0RMD8 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 580

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 407 TVLPTRSGPSSNALPPRNHSRFNVSGTTFTGRDKNRQTNNSGHLRWYTITAPTGSNII 234
           TV  TRS P+   +P R+ +   ++   + G D     +      WYT T P GS +I
Sbjct: 327 TVTVTRSDPTGTVIPVRSAAPATLTSGQWVGADVEAPADRPV---WYTATEPAGSAVI 381


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,858,834
Number of Sequences: 1657284
Number of extensions: 14968952
Number of successful extensions: 36294
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36277
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)