Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30082
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    26   0.34 
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   0.79 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.4  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   1.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   3.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   3.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   3.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.7  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 418 LGLGQCYPPGRVLHQTPY-HLVTIHDLTSQVQHSRAVIRTDRPT 290
           +G+ +  PP RVLHQ P  H    + L  Q QH R  + T  PT
Sbjct: 182 MGVHRAKPPMRVLHQCPVCHKKFTNALVLQ-QHIR--LHTGEPT 222


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 310 SRPVNVVPETLNRE 351
           +RPVN VP  LNRE
Sbjct: 284 ARPVNQVPRDLNRE 297


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 456 NPNAHQHKPVSEG*GSDSATHPVGS-FIKRPTTS*PF 349
           N + H H+    G    +ATH +GS + + P  S PF
Sbjct: 131 NSHVHHHQTSLLGKVEGAATHHLGSVYSRHPYESWPF 167


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 376 QTPYHLVTIHDLTSQVQHSRAVIRTDRPTIPA 281
           Q+ +H+ T  +   +V HS ++ R+ R TI A
Sbjct: 134 QSYFHIATTSNEFIRVHHSGSITRSIRLTITA 165


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 126  SFRMLSSWFCRCRSSICK*ATERVE*ARPDRHLRYDN 236
            +FR  S  + + R SI   A  RV  ARP   LRY N
Sbjct: 1413 AFRKKSLAYVQQRMSI---APNRVSQARPSVQLRYPN 1446


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 126  SFRMLSSWFCRCRSSICK*ATERVE*ARPDRHLRYDN 236
            +FR  S  + + R SI   A  RV  ARP   LRY N
Sbjct: 1413 AFRKKSLAYVQQRMSI---APNRVSQARPSVQLRYPN 1446


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 137 HSEA*LPPPNALHPYYLWVEIK 72
           H+ + +P P  + P Y W+++K
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVK 203


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 137 HSEA*LPPPNALHPYYLWVEIK 72
           H+ + +P P  + P Y W+++K
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVK 203


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 137 HSEA*LPPPNALHPYYLWVEIK 72
           H+ + +P P  + P Y W+++K
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVK 203


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 83  PINNMGEVHLAEEVKLPNV 139
           P+N + EV L +EV+ PN+
Sbjct: 575 PLNAIVEVVLVDEVQSPNL 593


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 240 YHYRNGGAGPVELIQLS 190
           Y Y NG AGP+ +   S
Sbjct: 94  YSYANGAAGPIPVSMAS 110


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 83  PINNMGEVHLAEEVKLPNV 139
           P+N + E+ L +EV+ PN+
Sbjct: 575 PLNAIVEIVLVDEVQQPNL 593


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 339 RLRYNIHGP**EQTDQQFRP 280
           R R ++HGP  +   Q++RP
Sbjct: 93  RDRRSLHGPQQQMDGQEYRP 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,119
Number of Sequences: 336
Number of extensions: 3989
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)