Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30082
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.0  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    27   2.0  
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    26   6.0  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 416  RARTVLPTRSGPSSNALPPRNHSRFNVSGT 327
            R + +LP RSG SS+ +P  N +  NV  T
Sbjct: 1016 RVKPLLPPRSGSSSSGVPAPNLTPVNVPPT 1045


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -2

Query: 481 LVHDAHATESQCSPTQACIGGLGLGQCYPPGRVLHQTPYHLVTIHDLTSQVQHSRAVI 308
           L  + H TE   +  + C    GLG C PPG    Q   HL    D+ S +   RA++
Sbjct: 140 LAENKHITECAVATLREC----GLGACGPPGFYGTQDK-HLRLEKDIASFIGVERAIV 192


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 414 GSDSATHPVGSFIKRPTTS*PFT 346
           GSDSA HP  S +K P  +  FT
Sbjct: 238 GSDSAPHPRSSKLKTPPAAGVFT 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,939
Number of Sequences: 5004
Number of extensions: 60721
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)