Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30082
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0494 + 24316007-24316365,24317307-24317706                       30   2.0  
02_03_0007 - 13875735-13875826,13876217-13877465                       29   4.7  
05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827...    28   8.2  

>11_06_0494 + 24316007-24316365,24317307-24317706
          Length = 252

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 192 SPSLICISNFCIDKTKMTTFGSLTSSAKC 106
           SPSL  IS +C D+T+M+T G    + KC
Sbjct: 121 SPSLKVISVWCSDETRMSTEGFAELTRKC 149


>02_03_0007 - 13875735-13875826,13876217-13877465
          Length = 446

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 136 CCHLGFVDAEVRYANERRRELNKLDRTGTSVTIMILLPVGAVIVYHLKWPELLVCLFLSR 315
           C H   +D E   + E +R+LN   R      ++ LL  G  I+Y + +  LLV  FLS 
Sbjct: 370 CTHRITIDPESTPSREPQRQLNNAMREVVKKEVLKLLHTG--IIYPISY-RLLV--FLSD 424

Query: 316 PV-NVVPETLNR 348
            + N++P    R
Sbjct: 425 TIGNIIPSNSTR 436


>05_03_0085 -
           8271718-8272005,8272110-8272393,8273610-8274012,
           8274792-8274816,8275686-8276149
          Length = 487

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 398 PTRSGPSSNALPPRNHSRFNVSGT 327
           P R GPS N  PP  H R   S T
Sbjct: 33  PYRRGPSPNPKPPSKHRRHMASAT 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,454,978
Number of Sequences: 37544
Number of extensions: 417167
Number of successful extensions: 1009
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)