Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30082
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59462| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)                     29   4.8  
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)                28   6.3  
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)              28   6.3  
SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)                   28   6.3  

>SB_59462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -1

Query: 482 PCP*CACNRIPMLTNTSLYRRARARTVLPTRSGPSSNALPPRNHSRFNVSGTTFTGRDKN 303
           P P C    +P   N   Y  +   +  P  S      +PP + +  +++ +T   R K 
Sbjct: 20  PTPLCESRMVPSDENDPRYSHSEGGSPSPMESIKERLVVPPSHDNNRDIADSTLNNRKKK 79

Query: 302 RQTN 291
           R+ N
Sbjct: 80  RRKN 83


>SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)
          Length = 878

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 353 HSRFNVSGTTFTGRDKNRQTNNSGHLRWYTITAPTGSNIII 231
           H+ +N + T +TG +    T  +G   +YT+TA TGSN I+
Sbjct: 556 HTGYNYTMTAYTGSNYT-MTARTGS--YYTMTAYTGSNYIM 593


>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
          Length = 739

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 84  P*IIWVKCIWRRKLSFRMLSSWFCRCRSSICK*ATERV 197
           P I+ VKCI    L +R L + FC+C S + K A +++
Sbjct: 464 PRILAVKCILFN-LVYRRLPANFCKCESMLIKGARQKM 500


>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
          Length = 951

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 413 ARTVLPTRSGPSSNALPPRN 354
           ART+ PT  GP +  LPP N
Sbjct: 829 ARTLPPTNDGPHARTLPPTN 848


>SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)
          Length = 728

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 479 KDILTMIHTSGPPVSVLSKERIARFVRSIQYDSY--CDGMITQE-NVNI*ST*SKNVII 646
           K++LT IH      S+    R+ARF +  ++D     D ++T E N+   ST    VI+
Sbjct: 192 KNVLTRIHICAYYSSLFQGSRLARFTKCTRFDRLYESDALVTTEVNLQPSSTVKSMVIL 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,459,269
Number of Sequences: 59808
Number of extensions: 481852
Number of successful extensions: 1096
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)