Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30082
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.4  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 646 NYYIFTLSRLDVYILLS 596
           NYY+F+L+  D+ +L+S
Sbjct: 89  NYYLFSLAVSDLLLLIS 105


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 482 DILTMIHTSGPPVSVLSKERIARFVRSIQYDSYCD 586
           D L  +   G PV V+    + RF     +  YC+
Sbjct: 186 DDLVFLWKEGDPVQVVKNLHLPRFTLEKFFTDYCN 220


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 482 DILTMIHTSGPPVSVLSKERIARFVRSIQYDSYCD 586
           D L  +   G PV V+    + RF     +  YC+
Sbjct: 186 DDLVFLWKEGDPVQVVKNLHLPRFTLEKFFTDYCN 220


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 376 QTPYHLVTIHDLTSQVQHSRAVIRTDRPTIPA 281
           Q+ +H+ T  +   ++ HS ++ R+ R TI A
Sbjct: 105 QSYFHIATTSNEFIRIHHSGSITRSIRLTITA 136


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 376 QTPYHLVTIHDLTSQVQHSRAVIRTDRPTIPA 281
           Q+ +H+ T  +   ++ HS ++ R+ R TI A
Sbjct: 105 QSYFHIATTSNEFIRIHHSGSITRSIRLTITA 136


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 401  LPTRSGPSSNALPPRNHSRFNVS 333
            +P    P     PPRNH + N S
Sbjct: 1851 IPVSGSPEPPPPPPRNHDQNNSS 1873


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 376 QTPYHLVTIHDLTSQVQHSRAVIRTDRPTIPA 281
           Q+ +H+ T  +   ++ HS ++ R+ R TI A
Sbjct: 44  QSYFHIATTSNEFIRIHHSGSITRSIRLTITA 75


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 427  IGGLGLGQCYPPGRVLHQTP 368
            + G G+G C P G V  Q P
Sbjct: 965  VSGGGMGGCQPGGVVQSQQP 984


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 256 HQPAVISLS*RRCRSGRAYSTLSVAHL 176
           +QPA      +R  SGR YS  S+ H+
Sbjct: 417 YQPAFRCKPSQRFASGRYYSAYSLHHV 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,167
Number of Sequences: 438
Number of extensions: 4573
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)