Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30082
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putativ...    29   2.2  
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putativ...    29   2.2  
At5g41950.1 68418.m05108 expressed protein                             29   3.9  
At2g39210.1 68415.m04816 nodulin family protein similar to nodul...    29   3.9  
At5g11910.1 68418.m01393 esterase/lipase/thioesterase family pro...    28   5.2  
At1g10720.1 68414.m01221 BSD domain-containing protein contains ...    27   9.0  

>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative
           (UBP24) identical to ubiquitin-specific protease 24
           [Arabidopsis thaliana] GI:11993488
          Length = 551

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -2

Query: 340 TSQVQHSRAVIRTDRPTIPAI*DGILLPHQPAVISLS*RRCRSGRAYSTLS--VAHLHIE 167
           +S ++++  V+   RP  PA+ +G+L    P V++    R R   A   LS  +  +H E
Sbjct: 256 SSSIRNNVTVVEAGRPFRPAMFEGVLRNFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDE 315

Query: 166 LLHRQNQDDNI 134
           LL  + Q   +
Sbjct: 316 LLKLKEQSPKV 326


>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative
           (UBP24) identical to ubiquitin-specific protease 24
           [Arabidopsis thaliana] GI:11993488
          Length = 551

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -2

Query: 340 TSQVQHSRAVIRTDRPTIPAI*DGILLPHQPAVISLS*RRCRSGRAYSTLS--VAHLHIE 167
           +S ++++  V+   RP  PA+ +G+L    P V++    R R   A   LS  +  +H E
Sbjct: 256 SSSIRNNVTVVEAGRPFRPAMFEGVLRNFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDE 315

Query: 166 LLHRQNQDDNI 134
           LL  + Q   +
Sbjct: 316 LLKLKEQSPKV 326


>At5g41950.1 68418.m05108 expressed protein
          Length = 565

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 424 GGLGLGQCYPPGRVLHQTPYHLVTIHDLTSQVQHSRAVIRTDRPTIP 284
           GG G G+  PPG +  Q+  ++   H L        + +R  R  +P
Sbjct: 381 GGSGNGKDMPPGELYSQSAIYIAAAHSLKPSYSVYSSALRLVRSMLP 427


>At2g39210.1 68415.m04816 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 601

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 226 VTIMILLPVGAVIVYHLK-WPELLVCLFLSRPVNVVPE 336
           V +++LLP+  VI+   K W E  V L    P+NVV E
Sbjct: 254 VIVLLLLPIIVVILEEKKLWKEKQVALNDPAPINVVTE 291


>At5g11910.1 68418.m01393 esterase/lipase/thioesterase family
           protein low similarity to cinnamoyl ester hydrolase CinI
           [Butyrivibrio fibrisolvens] GI:1622732; contains
           Interpro entry IPR000379
          Length = 297

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -1

Query: 629 SKSIRCLHSPELSYRHNMSHIGLILQNELFALYLGLRRAVLMYESWLICPCP*CACNRIP 450
           S++ R   S E   +  + H  ++++N      +G+       E+ +IC     + NRIP
Sbjct: 2   SETRRNQSSDEQIEKSEIQHQRVVIENSHGEKLVGVLHDTGSTETVVICHGFRSSKNRIP 61

Query: 449 MLTNTSLYRRA 417
           MLT  S + RA
Sbjct: 62  MLTIASFFERA 72


>At1g10720.1 68414.m01221 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 429

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 422 RARARTVLPTRSGPSSNALPPRNHSRFNVSGTTFTGRDKNRQTN 291
           R  A  + P   G SS++    NH RFN S ++  G +++R ++
Sbjct: 75  RGVANFLAPLPDGSSSSSSDLSNHPRFNQSRSSDPGLNQSRSSD 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,368,452
Number of Sequences: 28952
Number of extensions: 324422
Number of successful extensions: 748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)