Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30081
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.62 
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.5  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    26   5.8  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   7.6  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 390 LPFG--PQDRVCNFRRPRQEDFRVVPPSQSGALMPTE 494
           LP+   PQ+   + +RPR ED  V+ PSQ+  +  T+
Sbjct: 61  LPYNLVPQNSSTSKKRPRAEDLLVIEPSQNSLVPSTQ 97


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 370 LRVSSTVCHSVRRIGYVISGGHDKRIFVSCRLLKVAH*CRLNILTDESCSMTSWRPTVLR 549
           L+++S++   +  +G ++SG     + +SC L+       +N+  +   S   WR T LR
Sbjct: 96  LKLTSSILFFLVAVGVLLSGDATILLTLSCSLIVEGVLIIINVWRETLDSFLVWRHTCLR 155


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 217 IYHRIGNATQWAVTHRLVYSPN 282
           I+ ++G A +W+  +R++ SPN
Sbjct: 164 IFSQLGQALRWSYGYRILLSPN 185


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 260 WVTAHWVAFPIRW*IL 213
           W+ A+W  F +RW IL
Sbjct: 418 WLNAYWSMFHVRWPIL 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,382
Number of Sequences: 5004
Number of extensions: 60598
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)