Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30081
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0873 + 21202630-21204021                                         29   4.5  
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    29   4.5  
07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815...    28   6.0  
10_08_0612 - 19228262-19228570,19229955-19230404                       28   7.9  
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412...    28   7.9  
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140     28   7.9  

>10_08_0873 + 21202630-21204021
          Length = 463

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 466 EGGTTRKSSCRGRRKLHTRSCGP 398
           EGG TRK  C GRR +H R   P
Sbjct: 23  EGGATRKDPCAGRR-IHIRRLPP 44


>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 507 ISKYIQSASVRHFEKAARHENPLVVAAGNYI 415
           +S Y +S S+  F+ +AR   P+V ++ NY+
Sbjct: 53  VSNYSRSTSMERFQLSARFHQPVVDSSTNYL 83


>07_02_0019 +
           11877119-11879984,11880316-11880389,11881293-11881511,
           11881557-11881679,11881759-11881859,11881938-11881990,
           11882084-11882269,11882677-11882894
          Length = 1279

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 420 NFRRPRQED-FRVVPPSQSGALMPTEYTY**VMLHDIMETHGAPTAILQKRDWMT*RGFK 596
           +FR   ++D FR++   ++  + P  YTY  +M+H + ++ G P       + MT +G K
Sbjct: 429 HFRHHSKKDAFRLLSEMENAGISPNVYTY-SIMIHGLCQS-GEPEKASDLLEEMTTKGLK 486


>10_08_0612 - 19228262-19228570,19229955-19230404
          Length = 252

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 451 RKSSCRGRRKLHTRSCGPNGKQSTTP*ARHFGSTNSAFRYLKHRSPLSSNPS 296
           R+ S R R +   RS  P+ +Q  +  ++ F  +  AFR  + R PL+S  S
Sbjct: 197 REESARNRTRF-VRSREPSEEQPRSSTSKRFIKSGGAFRPQQKRRPLASKES 247


>09_04_0107 -
           14640097-14640348,14640472-14640701,14640805-14641215,
           14641481-14643831,14643927-14644093
          Length = 1136

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 322 RSPLSSNPSHATKGSVSKLIYGLQPTGSRFR-FGG 221
           R P +S+PS A++GS +  + G     S F  FGG
Sbjct: 307 RKPAASSPSAASRGSAAAAVSGRTSFASEFSGFGG 341


>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
          Length = 695

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -1

Query: 441 LVVAAGNYIPDPADRMANSRRHPKHVISDPLTV 343
           L++ AG  +P PADR A + R P+ +IS  LT+
Sbjct: 474 LMLYAGIRLP-PADRAAPAPRPPRIIISTDLTI 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,768,218
Number of Sequences: 37544
Number of extensions: 442457
Number of successful extensions: 1057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)