Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30081
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   30   2.0  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  29   4.6  
SB_29927| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_46841| Best HMM Match : zf-AN1 (HMM E-Value=2.4)                    28   8.0  
SB_40032| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -3

Query: 394 GKQSTTP*ARHFGSTNSAFRYLKHRSPLSSNPSHATKGSVSKLIYGLQPTGSRFRFGGR 218
           G+  +T     FG T+S+           S P   + G+ +  ++G +PTG  F+  GR
Sbjct: 793 GQAISTSAGSGFGQTSSSSTGTTFGQSAFSKPQENSTGTGTSSLFGNKPTGDLFKLQGR 851


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -3

Query: 451  RKSSCRGRRKLHTRSCGPNGKQSTTP*ARHFGSTNSAFRYLKHRSPLSSNPSHATKGSVS 272
            R+S   G R+L  R    NG   T    R     N  +   + +  L S+PS+  KGSVS
Sbjct: 1224 RRSVQAGDRELLRRDRSSNGSHGTEYTTRKSKELNDMWE--RFQESLRSSPSYTKKGSVS 1281


>SB_29927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 320 PVLEVPKSTVSGS--EMTCLGCRRLFAIRSAGS 412
           P    PK+  SGS  E TC GC++ F + S G+
Sbjct: 74  PTAPSPKTPSSGSLKEATCPGCQKTFKLFSEGA 106


>SB_46841| Best HMM Match : zf-AN1 (HMM E-Value=2.4)
          Length = 266

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 557 DSCRSTVGLHD---VMEHDSSVSIFSRHQCATLRRRHDTKILLS 435
           D C   + +H+   +M  D    + S H+C  L   H+ K+L+S
Sbjct: 31  DECSVLMSIHECNVLMSIDECKLLMSIHECNVLMSIHECKVLMS 74


>SB_40032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 557 DSCRSTVGLHD---VMEHDSSVSIFSRHQCATLRRRHDTKILLS 435
           D C   + +H+   +M  D    + S H+C  L   H+ K+L+S
Sbjct: 103 DECSVLMSIHECNVLMSIDECKLLMSIHECNVLMSIHECKVLMS 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,876,932
Number of Sequences: 59808
Number of extensions: 505338
Number of successful extensions: 1238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)