Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30081
         (678 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled ...    29   0.10 
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    26   0.95 
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    26   0.95 
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    26   0.95 
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   2.9  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   3.8  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    24   3.8  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   6.7  

>AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled
           receptor 4 protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 0.10
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 43  LAHLMDIWLQHDVRNVWFLFLPKLTALMSA*P*RVGELSGLKPRGVATLG 192
           L ++MDI LQH+    +      +     A P  +G   GL P G   LG
Sbjct: 7   LLNIMDISLQHEYLQEYLQSAAAMANFSGANPYGLGGFGGLAPNGTGLLG 56


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TNLWV   W  + +RW
Sbjct: 78  TNLWVKQKWFDYKLRW 93


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TNLWV   W  + +RW
Sbjct: 76  TNLWVEQSWYDYKLRW 91


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TNLWV   W  + +RW
Sbjct: 76  TNLWVEQSWYDYKLRW 91


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TNLWV   W  + ++W
Sbjct: 72  TNLWVEQTWYDYKLKW 87


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN+W++  W  + +RW
Sbjct: 72  TNIWLSLEWNDYNLRW 87


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +3

Query: 39  CACSSHGHMASARCKECMVSFST*ADSLDVSVTLTCG*ALG 161
           C C+ H  +  +    C+   +T  D+ D       G ALG
Sbjct: 727 CDCNKHAEICDSETGRCICQHNTAGDTCDQCAKGYYGNALG 767


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 TNLWVTAHWVAFPIRW 222
           TN+WV   W  + ++W
Sbjct: 72  TNVWVEQEWNDYKLKW 87


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,352
Number of Sequences: 2352
Number of extensions: 17355
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)