Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30081
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69716-2|CAA93527.1|  474|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U61952-3|AAB03161.1|  236|Caenorhabditis elegans Cytochrome p450...    30   1.7  
AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormo...    29   2.3  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    26   2.3  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    26   2.3  

>Z69716-2|CAA93527.1|  474|Caenorhabditis elegans Hypothetical
           protein C04B4.2 protein.
          Length = 474

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -2

Query: 578 HPIPFLQDSCRSTVGLHDVMEHDSSVSIFSRHQCATLRRRHDTKILLSWPPEITYPILRT 399
           H   F   S  + V     + H   +S F    C    +RH    LL  PP +  P+L T
Sbjct: 265 HSWAFTLSSHGTYVSAKRNLPHFDYMSFFEGIVCTATPQRHQKSKLLKHPPGLQIPLLNT 324

Query: 398 EWQTV 384
             Q +
Sbjct: 325 RAQAL 329


>U61952-3|AAB03161.1|  236|Caenorhabditis elegans Cytochrome p450
           family protein 33E3 protein.
          Length = 236

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 511 SCSMTSWRPTVLRQLSCKNGI 573
           +CS+ +W+ TV R+ +C+NGI
Sbjct: 200 ACSIFNWKTTVSRRRTCQNGI 220


>AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 130 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 3   REYIFTLYNIQRCACSSHG-HMASARCKECMVSF 101
           +E +  LY  Q CA  +HG H  +  C+ C   F
Sbjct: 28  QELVVNLYTCQVCALPAHGNHFGAISCRACAAFF 61


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 25.8 bits (54), Expect(2) = 2.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 276  TEPFVACDGFDDNGD 320
            T PF  CDG DD GD
Sbjct: 3684 TRPFQICDGNDDCGD 3698



 Score = 21.8 bits (44), Expect(2) = 2.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 294  CDGFDDNGDR 323
            CDG DD GDR
Sbjct: 3729 CDGDDDCGDR 3738


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 25.8 bits (54), Expect(2) = 2.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 276  TEPFVACDGFDDNGD 320
            T PF  CDG DD GD
Sbjct: 3684 TRPFQICDGNDDCGD 3698



 Score = 21.8 bits (44), Expect(2) = 2.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 294  CDGFDDNGDR 323
            CDG DD GDR
Sbjct: 3729 CDGDDDCGDR 3738


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,365,528
Number of Sequences: 27780
Number of extensions: 357178
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)