Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30080
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    27   0.19 
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    25   0.75 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   2.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.0  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.2  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 3   RCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSP 98
           R  R VVPP   C  P+T+ P P     D++ P
Sbjct: 195 RSLRCVVPPTEDCDVPSTIPPPPPEEDDDSNIP 227


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 436 DVDIRKDLYANTVLSGGTTMYPGIATVCK 522
           D D+ KD     VL GG+T  P I  + K
Sbjct: 150 DADMTKDQIDEIVLVGGSTRIPKIQQLIK 178


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 185 TTAEREIVRDIKEKLCYVALDFERKWP 265
           T A+R + +  KEKL  +A+    +WP
Sbjct: 4   TGADRLMTQRCKEKLNTLAISVMNQWP 30


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 64  HRAHLRRIRTPPRHPASGLSRSRP 135
           H+A +R +  PP+       RS P
Sbjct: 62  HKAPIRPVALPPKREIPSPKRSSP 85


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 18  VVPP-VSCWTPATVSPTPCPS-TKDTHSPTPS 107
           V+PP  +    AT   +P    TKD  SPTPS
Sbjct: 22  VIPPHYNIHHGATPPQSPNQQYTKDCSSPTPS 53


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 673 LVVLLFSRIHICWK*RGSEESIHRSIRSTSSLEG 572
           LVVL+F+   IC +   S ES  R   S  S  G
Sbjct: 216 LVVLIFTYTSICIEIWQSSESSLRPRSSQKSAPG 249


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 245 DFERKWPPLHPAAPSRSLTNFPTVRSSLSE 334
           DFE     ++   P+++ TN PT R    E
Sbjct: 357 DFELLIKGVYQVNPTKTRTNLPTHRHPQDE 386


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,770
Number of Sequences: 336
Number of extensions: 4153
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)