BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS30080 (676 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 187 1e-48 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 110 2e-25 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 109 3e-25 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 7e-14 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 66 4e-12 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 58 2e-09 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 53 4e-08 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 4e-06 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 38 0.002 SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.20 SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 27 2.5 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.3 SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.3 SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 4.3 SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 7.6 SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.6 SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 10.0 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 10.0 SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 10.0 SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe... 25 10.0 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 187 bits (455), Expect = 1e-48 Identities = 92/134 (68%), Positives = 103/134 (76%) Frame = +1 Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 435 E+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKC Sbjct: 226 ELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKC 285 Query: 436 DVDIRKDLYANTVLSGGTTMYPGIATVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGSI 615 DVDIRKDLY N V+SGGTTMYPGIA +++ Q +++ + PERKYSVWIGGSI Sbjct: 286 DVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSI 345 Query: 616 PRFLSTSNRCGFSK 657 LST + SK Sbjct: 346 LASLSTFQQMWISK 359 Score = 172 bits (419), Expect = 3e-44 Identities = 85/99 (85%), Positives = 91/99 (91%) Frame = +2 Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181 SLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F Sbjct: 141 SLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTF 200 Query: 182 TTTAEREIVRDIKEKLCYVALDFERKWPPLHPAAPSRSL 298 +TTAEREIVRDIKEKLCYVALDFE++ L AA S SL Sbjct: 201 STTAEREIVRDIKEKLCYVALDFEQE---LQTAAQSSSL 236 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 110 bits (264), Expect = 2e-25 Identities = 48/83 (57%), Positives = 67/83 (80%) Frame = +2 Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181 +LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ Sbjct: 146 ALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHEL 205 Query: 182 TTTAEREIVRDIKEKLCYVALDF 250 ++AE+EIVR+IKEK CYVA DF Sbjct: 206 VSSAEKEIVREIKEKCCYVASDF 228 Score = 99 bits (238), Expect = 3e-22 Identities = 49/131 (37%), Positives = 74/131 (56%) Frame = +1 Query: 250 RAEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIM 429 R+E+ + +Y+LPD Q IT+G E F PE LF P +G EA G+H + SI+ Sbjct: 229 RSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSIL 288 Query: 430 KCDVDIRKDLYANTVLSGGTTMYPGIATVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGG 609 D+D+R LY+N VLSGG+T+ G + + ++ +++ PER ++ W+GG Sbjct: 289 LSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGG 348 Query: 610 SIPRFLSTSNR 642 SI LST R Sbjct: 349 SILASLSTFRR 359 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 109 bits (263), Expect = 3e-25 Identities = 48/84 (57%), Positives = 64/84 (76%) Frame = +2 Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181 SLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAF 200 Query: 182 TTTAEREIVRDIKEKLCYVALDFE 253 TA+ E VR++KEKLCYV+ D E Sbjct: 201 NRTADFETVREMKEKLCYVSYDLE 224 Score = 91.1 bits (216), Expect = 1e-19 Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 11/134 (8%) Frame = +1 Query: 247 LRAEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 426 L + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I Sbjct: 223 LELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTI 282 Query: 427 MKCDVDIRKDLYANTVLSGGTTMYPGIATVCKRK-SQL--------SPHRQ*RLRSLL-- 573 DVDIRK LY VLSGG++MY G+ + +++ QL P R + + Sbjct: 283 QAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIED 342 Query: 574 LPERKYSVWIGGSI 615 P R+++V+IGG++ Sbjct: 343 APRRRHAVFIGGAV 356 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 72.1 bits (169), Expect = 7e-14 Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 11/141 (7%) Frame = +1 Query: 268 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYN 420 A +SS K +E PDG G ERFR E LF PSF + G+HE Y Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330 Query: 421 SIMKCDVDIRKDLYANTVLSGGTTMYPGIATVCKRKSQ-LSPHRQ*RLRSL-LLPERKYS 594 SI+ CD ++R L N V++GGT++ PG++ + + Q L+ + + + + Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390 Query: 595 VWIGGSIPRFLSTSNRCGFSK 657 VW GGSI L SK Sbjct: 391 VWFGGSILASLDNFQHLWVSK 411 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 66.1 bits (154), Expect = 4e-12 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Frame = +2 Query: 26 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 199 TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239 Query: 200 EIVRDIKEKLCYVALDFERKW 262 IKE+ CYV D +++ Sbjct: 240 -----IKEECCYVCPDIVKEF 255 Score = 48.4 bits (110), Expect = 9e-07 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 322 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 498 I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++ Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339 Query: 499 PGIATVCKR 525 +R Sbjct: 340 KNFGNRLQR 348 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 57.6 bits (133), Expect = 2e-09 Identities = 28/87 (32%), Positives = 50/87 (57%) Frame = +2 Query: 32 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 211 +V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216 Query: 212 DIKEKLCYVALDFERKWPPLHPAAPSR 292 +IKE +CYV+ +F+ H S+ Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSK 243 Score = 48.8 bits (111), Expect = 7e-07 Identities = 24/63 (38%), Positives = 32/63 (50%) Frame = +1 Query: 316 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 495 QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331 Query: 496 YPG 504 +PG Sbjct: 332 FPG 334 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 52.8 bits (121), Expect = 4e-08 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Frame = +1 Query: 397 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIATVCKRK-SQLSPHRQ*RLR-SL 570 GI + N I +CDVDIR L N ++ GGT++ G + + + S+L P + ++ S Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGSRLKIHASG 385 Query: 571 LLPERKYSVWIGGSIPRFLSTSNRCGFSK 657 + ER Y+ W+GGSI L T ++ S+ Sbjct: 386 HVVERSYASWLGGSILSSLGTFHQLWISR 414 Score = 30.7 bits (66), Expect = 0.20 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = +2 Query: 8 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 175 +ASG+ T ++D G S IY+G+ L +G + D L + L ++ + Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 46.4 bits (105), Expect = 4e-06 Identities = 20/64 (31%), Positives = 38/64 (59%) Frame = +1 Query: 337 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIATV 516 E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ T Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653 Query: 517 CKRK 528 KR+ Sbjct: 654 IKRE 657 Score = 37.1 bits (82), Expect = 0.002 Identities = 19/76 (25%), Positives = 35/76 (46%) Frame = +2 Query: 23 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 202 ++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPS 224 Query: 203 IVRDIKEKLCYVALDF 250 + C+V+ D+ Sbjct: 225 QAELLMHDHCHVSSDY 240 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 37.5 bits (83), Expect = 0.002 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = +2 Query: 5 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 184 LYA G G+V+D G + PI +G + A +L L GR +T +L +L E + Sbjct: 188 LYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLK 247 Query: 185 TTAEREIVRDIKE 223 ++ + DI E Sbjct: 248 SSGQYVSKEDITE 260 >SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 30.7 bits (66), Expect = 0.20 Identities = 13/58 (22%), Positives = 30/58 (51%) Frame = +2 Query: 8 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181 + +G + V+D G + + EG +P++ ++++ G D+T MK+L + + Sbjct: 286 FGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343 >SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 712 Score = 27.1 bits (57), Expect = 2.5 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = +2 Query: 164 ERGYSFTTTAEREIVRDIKEKLCYVALDFERKWPPLHP 277 E Y T ER + + +KE +C D R W +P Sbjct: 493 ENYYGNAFTTERTVPKTVKEAICDYNSDTSRTWDICNP 530 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 27.1 bits (57), Expect = 2.5 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +3 Query: 15 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 107 P VP S P+ P P PS++ P PS Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 26.6 bits (56), Expect = 3.3 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +3 Query: 24 PPVSCWTPATVSPTPCPSTKDTHSP 98 PPV+C TP P C K H P Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655 >SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 194 Score = 26.2 bits (55), Expect = 4.3 Identities = 18/51 (35%), Positives = 21/51 (41%) Frame = +1 Query: 10 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 162 R RS HR+ G RR P+R HL R RH + R R H Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187 >SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |Schizosaccharomyces pombe|chr 3|||Manual Length = 690 Score = 26.2 bits (55), Expect = 4.3 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 593 EYFLSGRSNDLNLHCRWGESCDFLLHTVAIPGY 495 EY ++GRS+ NL +GES + L T PG+ Sbjct: 590 EYTVNGRSHAFNLKSAYGES-EALSFTNYTPGF 621 >SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharomyces pombe|chr 2|||Manual Length = 865 Score = 25.4 bits (53), Expect = 7.6 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 271 QRWPFPLEVKSDVAQLLLDV 212 Q+W FPL DV L+DV Sbjct: 459 QKWMFPLSECQDVVDALIDV 478 >SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 636 Score = 25.4 bits (53), Expect = 7.6 Identities = 15/55 (27%), Positives = 24/55 (43%) Frame = +2 Query: 263 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS 427 PP+ +PS SL P S + + S R ++ +S + K + P T S Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271 >SPAC29A4.20 |||RNA polymerase II elongator complex, histone acetyltransferase subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 544 Score = 25.0 bits (52), Expect = 10.0 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Frame = +1 Query: 76 LRRIRTPPRHPASGLS----RSRPHRLPH 150 +R++R P ASG++ +PHR PH Sbjct: 70 MRKLRAKPVRTASGIAVVAVMCKPHRCPH 98 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 25.0 bits (52), Expect = 10.0 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = +3 Query: 9 TRPVVPPVSCWTPATVSPTPCPSTKDT 89 T P S TPA V P P PST T Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859 >SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit Sfc6|Schizosaccharomyces pombe|chr 2|||Manual Length = 582 Score = 25.0 bits (52), Expect = 10.0 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = +2 Query: 284 PSRSLTNFPTVRSSL--SETKDSVAQRLSSNPRSWVWKLAAST 406 P+ T F V L SET +SV R S + +WKL T Sbjct: 216 PTNKETQFLAVGGMLKFSETTESVFMRTSGRNQIQLWKLENKT 258 >SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 148 Score = 25.0 bits (52), Expect = 10.0 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = +2 Query: 293 SLTNFPTVRSS---LSETKDSVAQRLSSNPRSW-VWKLAASTRPHI 418 S T+ P VR S L D A L P +WK A ST PH+ Sbjct: 3 SYTHMPYVRPSAILLGIAFDHAASFLVYGPLMGDIWKRAMSTAPHV 48 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,070,105 Number of Sequences: 5004 Number of extensions: 66991 Number of successful extensions: 288 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 252 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 279 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 309878492 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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