Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30080
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 204 4e-53
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 203 9e-53
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 202 2e-52
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 202 2e-52
SB_56| Best HMM Match : Actin (HMM E-Value=0) 202 2e-52
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 200 6e-52
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 173 8e-44
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 169 2e-42
SB_54| Best HMM Match : Actin (HMM E-Value=0) 140 1e-33
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 115 3e-26
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 108 4e-24
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 80 1e-15
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 72 4e-13
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 47 2e-05
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 32 0.37
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_40776| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 3.4
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0) 29 4.5
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 29 4.5
SB_6983| Best HMM Match : rve (HMM E-Value=0.011) 29 4.5
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_6355| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 6.0
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 28 6.0
SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0) 28 6.0
SB_53874| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 28 7.9
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 204 bits (499), Expect = 4e-53
Identities = 103/135 (76%), Positives = 112/135 (82%), Gaps = 1/135 (0%)
Frame = +1
Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 435
EM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKC
Sbjct: 189 EMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKC 248
Query: 436 DVDIRKDLYANTVLSGGTTMYPGIA-TVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGS 612
DVDIRKDLYANTVLSGGTTMYPGIA + K S L+P +++ + PERKYSVWIGGS
Sbjct: 249 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTM-KIKIIAPPERKYSVWIGGS 307
Query: 613 IPRFLSTSNRCGFSK 657
I LST + SK
Sbjct: 308 ILASLSTFQQMWISK 322
Score = 176 bits (428), Expect = 2e-44
Identities = 86/99 (86%), Positives = 92/99 (92%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSF
Sbjct: 104 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSF 163
Query: 182 TTTAEREIVRDIKEKLCYVALDFERKWPPLHPAAPSRSL 298
TTTAEREIVRDIKEKLCYVALDFE++ + AA S SL
Sbjct: 164 TTTAEREIVRDIKEKLCYVALDFEQE---MQTAASSSSL 199
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 203 bits (496), Expect = 9e-53
Identities = 102/135 (75%), Positives = 112/135 (82%), Gaps = 1/135 (0%)
Frame = +1
Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 435
EM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKC
Sbjct: 227 EMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKC 286
Query: 436 DVDIRKDLYANTVLSGGTTMYPGIA-TVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGS 612
DVDIRKDLYANTVLSGG+TMYPGIA + K S L+P +++ + PERKYSVWIGGS
Sbjct: 287 DVDIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTM-KIKIIAPPERKYSVWIGGS 345
Query: 613 IPRFLSTSNRCGFSK 657
I LST + SK
Sbjct: 346 ILASLSTFQQMWISK 360
Score = 176 bits (428), Expect = 2e-44
Identities = 87/99 (87%), Positives = 92/99 (92%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF
Sbjct: 142 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 201
Query: 182 TTTAEREIVRDIKEKLCYVALDFERKWPPLHPAAPSRSL 298
TTTAEREIVRDIKEKLCYVALDFE++ + AA S SL
Sbjct: 202 TTTAEREIVRDIKEKLCYVALDFEQE---MTTAASSSSL 237
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 202 bits (493), Expect = 2e-52
Identities = 101/135 (74%), Positives = 112/135 (82%), Gaps = 1/135 (0%)
Frame = +1
Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 435
EM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKC
Sbjct: 227 EMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKC 286
Query: 436 DVDIRKDLYANTVLSGGTTMYPGIA-TVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGS 612
DVDIRKDLYANTVLSGG+TMYPGIA + K + L+P +++ + PERKYSVWIGGS
Sbjct: 287 DVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTM-KIKIIAPPERKYSVWIGGS 345
Query: 613 IPRFLSTSNRCGFSK 657
I LST + SK
Sbjct: 346 ILASLSTFQQMWISK 360
Score = 176 bits (428), Expect = 2e-44
Identities = 86/99 (86%), Positives = 92/99 (92%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSF
Sbjct: 142 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSF 201
Query: 182 TTTAEREIVRDIKEKLCYVALDFERKWPPLHPAAPSRSL 298
TTTAEREIVRDIKEKLCYVALDFE++ + AA S SL
Sbjct: 202 TTTAEREIVRDIKEKLCYVALDFEQE---METAASSSSL 237
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 202 bits (493), Expect = 2e-52
Identities = 101/135 (74%), Positives = 113/135 (83%), Gaps = 1/135 (0%)
Frame = +1
Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 435
EMATAA+SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKC
Sbjct: 226 EMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKC 285
Query: 436 DVDIRKDLYANTVLSGGTTMYPGIA-TVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGS 612
DVDIRKDLYANTVLSGG+TM+PGIA + K S L+P +++ + PERKYSVWIGGS
Sbjct: 286 DVDIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTM-KIKIIAPPERKYSVWIGGS 344
Query: 613 IPRFLSTSNRCGFSK 657
I LST + SK
Sbjct: 345 ILASLSTFQQMWISK 359
Score = 172 bits (419), Expect = 2e-43
Identities = 86/99 (86%), Positives = 91/99 (91%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF
Sbjct: 141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 200
Query: 182 TTTAEREIVRDIKEKLCYVALDFERKWPPLHPAAPSRSL 298
TTTAEREIVRDIKEKL YVALDFE++ + AA S SL
Sbjct: 201 TTTAEREIVRDIKEKLAYVALDFEQE---MATAAASSSL 236
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 202 bits (493), Expect = 2e-52
Identities = 101/135 (74%), Positives = 112/135 (82%), Gaps = 1/135 (0%)
Frame = +1
Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 435
EM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKC
Sbjct: 226 EMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKC 285
Query: 436 DVDIRKDLYANTVLSGGTTMYPGIA-TVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGS 612
DVDIRKDLYANTVLSGG+TMYPGIA + K + L+P +++ + PERKYSVWIGGS
Sbjct: 286 DVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTM-KIKIIAPPERKYSVWIGGS 344
Query: 613 IPRFLSTSNRCGFSK 657
I LST + SK
Sbjct: 345 ILASLSTFQQMWISK 359
Score = 177 bits (430), Expect = 9e-45
Identities = 87/99 (87%), Positives = 92/99 (92%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF
Sbjct: 141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 200
Query: 182 TTTAEREIVRDIKEKLCYVALDFERKWPPLHPAAPSRSL 298
TTTAEREIVRDIKEKLCYVALDFE++ + AA S SL
Sbjct: 201 TTTAEREIVRDIKEKLCYVALDFEQE---MQTAASSSSL 236
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 200 bits (489), Expect = 6e-52
Identities = 99/135 (73%), Positives = 112/135 (82%), Gaps = 1/135 (0%)
Frame = +1
Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 435
EM TAASSSS+EKSYELPDGQVITIGNERFRCPEAL QPSFLGME+ GIHETTYNSIMKC
Sbjct: 200 EMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKC 259
Query: 436 DVDIRKDLYANTVLSGGTTMYPGIATVCKRK-SQLSPHRQ*RLRSLLLPERKYSVWIGGS 612
DVDIRKDLYANTV+SGGTTMYPG+A +++ S L+P +++ + PERKYSVWIGGS
Sbjct: 260 DVDIRKDLYANTVMSGGTTMYPGLADRMQKEISALAPSTM-KIKIIAPPERKYSVWIGGS 318
Query: 613 IPRFLSTSNRCGFSK 657
I LST + SK
Sbjct: 319 ILASLSTFQQMWISK 333
Score = 72.9 bits (171), Expect = 2e-13
Identities = 51/99 (51%), Positives = 58/99 (58%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
SLYASGRTTGIV+DS G + H + I ERGYSF
Sbjct: 142 SLYASGRTTGIVMDS------------GDGVSHTV---------------PIYEERGYSF 174
Query: 182 TTTAEREIVRDIKEKLCYVALDFERKWPPLHPAAPSRSL 298
TTTAEREIVRDIKEKLCYVALDFE++ + AA S S+
Sbjct: 175 TTTAEREIVRDIKEKLCYVALDFEQE---MQTAASSSSI 210
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 173 bits (422), Expect = 8e-44
Identities = 82/129 (63%), Positives = 101/129 (78%)
Frame = +1
Query: 271 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIR 450
A+S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGMEA GIHE YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 451 KDLYANTVLSGGTTMYPGIATVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGSIPRFLS 630
KDLY+N VLSGG+TM+PGIA +++ + + +++ + PERKYSVWIGGSI LS
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLS 124
Query: 631 TSNRCGFSK 657
T + +K
Sbjct: 125 TFQQMWIAK 133
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 169 bits (410), Expect = 2e-42
Identities = 78/83 (93%), Positives = 81/83 (97%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
SLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLAGRDLTDYLMK++TERGYSF
Sbjct: 20 SLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYSF 79
Query: 182 TTTAEREIVRDIKEKLCYVALDF 250
TTTAEREIVRDIKEKLCYVALDF
Sbjct: 80 TTTAEREIVRDIKEKLCYVALDF 102
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 140 bits (338), Expect = 1e-33
Identities = 60/86 (69%), Positives = 75/86 (87%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
+LYASGRTTG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF
Sbjct: 2186 ALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSF 2245
Query: 182 TTTAEREIVRDIKEKLCYVALDFERK 259
+TAE++I+RD+KE LCY A+D+ER+
Sbjct: 2246 QSTAEQQIIRDLKETLCYCAMDYERE 2271
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/76 (55%), Positives = 52/76 (68%)
Frame = +1
Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 435
E+ A +S E Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+ + SI KC
Sbjct: 2271 ELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKC 2330
Query: 436 DVDIRKDLYANTVLSG 483
D+D+R +L+ N VLSG
Sbjct: 2331 DIDLRAELFHNIVLSG 2346
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 115 bits (277), Expect = 3e-26
Identities = 50/86 (58%), Positives = 67/86 (77%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
+LYA G TG+V+DSGDGV+H P+YEG+ALPH RLD+AGRD+T YL+K++ RGY+F
Sbjct: 145 TLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAF 204
Query: 182 TTTAEREIVRDIKEKLCYVALDFERK 259
TA+ E VR +KEKLCYV + E++
Sbjct: 205 NHTADFETVRMMKEKLCYVGYNIEQE 230
Score = 91.9 bits (218), Expect = 4e-19
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1
Query: 247 LRAEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 426
+ E A ++ L + Y LPDG+V+ + ERF PEALFQP + +E G+ E +N+I
Sbjct: 227 IEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTI 286
Query: 427 MKCDVDIRKDLYANTVLSGGTTMYPGIATVCKRK 528
D+D R + Y + VLSGG+TMYPG+ + +R+
Sbjct: 287 QAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERE 320
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 108 bits (260), Expect = 4e-24
Identities = 47/75 (62%), Positives = 65/75 (86%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
SLYA+GRTTG+VLD+GDGVSH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F
Sbjct: 167 SLYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCF 226
Query: 182 TTTAEREIVRDIKEK 226
+++E EIVR IKE+
Sbjct: 227 HSSSELEIVRTIKEE 241
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = +1
Query: 421 SIMKCDVDIRKDLYANTVLSGGTTMYPG 504
+I K D+D+R+ LY+N VLSGG+T++ G
Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 80.2 bits (189), Expect = 1e-15
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL-TERGYS 178
SLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +RG++
Sbjct: 771 SLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQRGHN 830
Query: 179 FTTTAEREIVRDIKEKLCYVALDFERKWPPLHPAAPSRSLTNFPTV 316
FT+++ +IV DIKEK+CY++ D ++ +H + LT F T+
Sbjct: 831 FTSSSGWQIVNDIKEKICYLSKDHLKE---VHNYKTNEGLTKFYTL 873
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 381
E+ ++ L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 857 EVHNYKTNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/122 (27%), Positives = 63/122 (51%)
Frame = +2
Query: 26 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 205
TG V+DSGDGV+H +P+ EGY + I + +AGRD+T ++ ++L ER E
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLREREMGIPPEQSMET 121
Query: 206 VRDIKEKLCYVALDFERKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWV 385
+ IKE+ Y+ D +++ + P++ + + ++ + ++ + P W+
Sbjct: 122 AKTIKERWGYICPDIAKEFAK-YEQEPAKWIKKYESINAVTTKILLRQFAKYEQEPAKWI 180
Query: 386 WK 391
K
Sbjct: 181 KK 182
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 322 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 498
+ + ERF PE F P F + + E N I C +D+R+ LY N VLSGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +2
Query: 8 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 166
+A+GR+ G+V+DSG + VP+++GY L AI+R LAG +T ++ E
Sbjct: 76 FANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQCRQMFEE 128
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 382 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIATVCKRK--SQLSPHRQ* 555
G A G+ + S+ D+DIR L+ + +++GG T+ G R+ S+ P +
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 556 RLRS-LLLPERKYSVWIGGSI 615
+L S E++++ WIGGSI
Sbjct: 206 KLISNNSSVEKRFNPWIGGSI 226
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 418 NSIMKCDVDIRKDLYANTVLSGGTTMYPG 504
+S++ C +D RK L N VL GGT M PG
Sbjct: 64 DSLLLCPIDTRKTLAENIVLIGGTAMTPG 92
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 32.7 bits (71), Expect = 0.28
Identities = 25/67 (37%), Positives = 30/67 (44%)
Frame = +1
Query: 10 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPHRARLLVHYH 189
R RS R R+ RRR RR R+P H S SRSR R P R+R H
Sbjct: 221 RSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSR-SRSPRRRHSRSRSPTHRR 279
Query: 190 RRAGNRS 210
R+ + S
Sbjct: 280 HRSRSHS 286
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 26 TGIVLDSGDGVSHTVPI 76
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 352 PEALFQPSFLGMEACGIHET 411
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +3
Query: 6 CTRPVVPPVSCWTPATVSPTPC-----PSTKDTHSP 98
CT+ +P +TP T TPC PST+ +H+P
Sbjct: 859 CTKRYIPSAKRYTPCTERYTPCTKRYTPSTEPSHAP 894
>SB_40776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 26.6 bits (56), Expect(2) = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 273 IQQLPREVLRTSRRSGHHYRKRKIPLPRGSLPTLVLG 383
IQQ PR LR Y +RK+ + +PT+ LG
Sbjct: 466 IQQYPRRKLRVISIGIQQYPRRKLRVISIGIPTISLG 502
Score = 21.8 bits (44), Expect(2) = 1.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 504 NRDRMQKEITALAPSTMKIKIIAPSR 581
NR +++KE+T L +K+ PS+
Sbjct: 512 NRYKVEKEVTELMMKALKLCEPGPSK 537
>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/86 (22%), Positives = 35/86 (40%)
Frame = -2
Query: 438 VALHDGVICGLVDAASFHTQERGLEESLWATESFVSDSDDLTVGKFVRLLEGAAGCSGGH 259
+A G + G + + +G + + A + F + + D+ V K RLL +
Sbjct: 237 IAAIPGFVVGALIVFTLKEPVKGEQAPMQARKVFTNKTQDIKVSKLTRLLVANTSMFSQN 296
Query: 258 FRSKSRAT*HSFSLMSRTISRSAVVV 181
SKS LM +T R +++
Sbjct: 297 LVSKSAVIKLKLVLMLKTFRRPTLLI 322
>SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 329
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 282 LPREVLRTSRRSGHHYRKRKIPLPRGSLP 368
LPR ++R HY++ +PLPRG P
Sbjct: 132 LPRGGSPLTKRRESHYQEEGVPLPRGGSP 160
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 282 LPREVLRTSRRSGHHYRKRKIPLPRGSLP 368
LPR ++R HY++ +PLPRG P
Sbjct: 154 LPRGGSPLTKRRESHYQEEGVPLPRGGGP 182
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 6 CTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 107
C+RP PPV+ T +T S T +T T + TP+
Sbjct: 620 CSRPTTPPVTT-TKSTTSSTTKGTTASTTTSTPT 652
>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 257 KWPPL--HPAAPSRSLTNFP---TVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHI 418
K+PP+ +PA PS L P TV SLS T S+P S V L+ S+ P++
Sbjct: 461 KYPPVSPNPAKPSNILFEGPSSSTVFKSLSPTDQMSNSPSQSSPGSSVSDLSCSSDPNV 519
>SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)
Length = 603
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 288 REVLRTSRRSGHHYRKRKIPLPR--GSLPTLVLGYGSLRHPR 407
R++LR R HHYR+ + R G++P + Y + R PR
Sbjct: 521 RDLLRALRNKKHHYRELPDEVKRSLGTIPDEYVRYFTSRFPR 562
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 320 SSLSETKDSVAQRLSSNPRSWVWK 391
S+ SETK SV +R + + W+W+
Sbjct: 96 STKSETKASVVERFNRTSKEWMWR 119
>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
Length = 251
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 9 TRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCV 113
T VVPP+ P V P+P + + SPTPSC+
Sbjct: 207 TPAVVPPI----PTLVVPSPL-TQPEVESPTPSCI 236
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 9 TRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 107
TRP VP +T PTP P T P P+
Sbjct: 932 TRPTVPTTPTTQASTTRPTPPPPTSALPPPIPA 964
>SB_6355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 514 VCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGSIPRFLS 630
VC+ L P R+ L PE+ YS+++GG+ RF S
Sbjct: 55 VCREFDPLQPGRRHEGPKSLDPEKYYSLFVGGAHLRFPS 93
>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1748
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 514 VCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGSIPRFLS 630
V + L P RQ R L PE+ YS+++GG+ RF S
Sbjct: 680 VRRESDPLPPSRQQRGPESLDPEKYYSLFVGGAHLRFPS 718
>SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 535 LSPHRQ*RLRSLLLPERKYSVWIGGSIPRFLS 630
L P RQ R L PE+ YS+++GG+ RF S
Sbjct: 62 LPPSRQQRGSESLDPEKYYSLFVGGAHLRFPS 93
>SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 570 APSREEVLRMDRWIDSSLPLYFQQMWILENRS 665
A + + V+ MD W D LPL + ++W+L +++
Sbjct: 428 AGTEKFVVSMDGWYDEDLPLSY-EVWVLSDKN 458
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 6 CTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*P 125
CT P ++ P T + T P TK P PS + T P
Sbjct: 150 CTGTPEPTITSKPPVTETTTTKPETKPPKPPAPSTIPTPP 189
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 61 PHRAHLRRIRTPPR-HPASGLSRSRPHRLPHEDPH 162
PHR H+ RTP R H + PH P +PH
Sbjct: 161 PHRPHMDPTRTPHRPHMDPTRTSHGPHTDPTRNPH 195
>SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)
Length = 893
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 318 LTVGKFVRLLEGAAGCSGGHF 256
+TVGK + L+ G AG GHF
Sbjct: 366 MTVGKLIELIAGKAGVLEGHF 386
>SB_53874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 272 HPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHI 418
HP SR +N P V S + V R+ SN V+ S +PH+
Sbjct: 113 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNQPHV 160
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 3 RCTRPVVPPVSCWTPATVSPTP-CPSTKDTHSPTPS 107
R P+ PP C + V PTP S+K + SP+PS
Sbjct: 328 RTFSPISPPAGC-AASPVPPTPPAISSKRSFSPSPS 362
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 272 HPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHI 418
HP SR +N P V S + V R+ SN V+ S +PH+
Sbjct: 615 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNQPHV 662
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,050,564
Number of Sequences: 59808
Number of extensions: 572678
Number of successful extensions: 2481
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2437
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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