Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30079
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0707 - 20212190-20214592                                         57   1e-08
04_04_1645 + 35024237-35024977                                         28   4.5  
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599...    28   5.9  

>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/81 (33%), Positives = 43/81 (53%)
 Frame = +1

Query: 4   VLMQRTPTSLERALPSLYTRVVGLAGVHXVQEPHFWTLCSEIHVGAMKLEVAREVDPRYV 183
           +L+QR P SLE+ +      V+ + GV  V   H W L +   VG   L +  E D   +
Sbjct: 716 ILLQRVPRSLEKDIKEALDDVMKIKGVIGVHNFHVWNLTNTDIVGTFHLHITTEADKSSI 775

Query: 184 TXQVARIFREAGVKHLTVQLD 246
             + + IF EAG++ LT+Q++
Sbjct: 776 REKASDIFHEAGIQDLTIQIE 796


>04_04_1645 + 35024237-35024977
          Length = 246

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 53  STRASWAWPACXXSRNRTF 109
           ST +SW WP+C  +R  +F
Sbjct: 31  STASSWQWPSCTQARTLSF 49


>06_01_0801 -
           5993726-5994160,5994811-5994969,5995071-5995211,
           5995999-5996097,5996180-5996542,5996929-5997150,
           5997257-5997448,5997997-5998056,5998162-5998378,
           5998471-5998523,5999013-5999084,5999928-6000113,
           6000986-6001132,6002902-6003075,6003149-6003300,
           6004269-6004360,6004549-6004710,6004875-6005053,
           6005173-6005304,6005454-6005507,6006082-6006191,
           6006317-6006487,6006577-6006663,6008488-6008611,
           6009355-6009564
          Length = 1330

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 114 SPKVRFLDXMHAGQAHDARVETGQRALQRGRSPLHEH 4
           SP  RFL+     ++H +R  +  R    GRSP+H H
Sbjct: 860 SPVERFLE-----KSHTSRSRSSSRGSSPGRSPVHHH 891


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,024,285
Number of Sequences: 37544
Number of extensions: 231738
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)