Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30079
(565 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7396| Best HMM Match : DUF1634 (HMM E-Value=2.4) 40 0.001
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_43105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_33791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_53635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_47486| Best HMM Match : Mic1 (HMM E-Value=7.8) 27 8.0
SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1) 27 8.0
SB_16610| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=9.3) 27 8.0
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_38118| Best HMM Match : TBCA (HMM E-Value=3.2) 27 8.0
SB_18108| Best HMM Match : HA (HMM E-Value=0.059) 27 8.0
SB_14219| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=5.8) 27 8.0
>SB_7396| Best HMM Match : DUF1634 (HMM E-Value=2.4)
Length = 119
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 4 VLMQRTPTSLERALPSLYTRVVGLAGVHXVQEPHFWTLCSEIHVGAMKLEVAREVDPRYV 183
VL+QRTP +E++L +++ GV ++ HFW + G + ++VA + +
Sbjct: 57 VLLQRTPLDMEKSLTGALNKILSFDGVLSFRDHHFWQHSESVVCGTIHVQVAPSASEQKI 116
Query: 184 TXQ 192
Q
Sbjct: 117 IQQ 119
>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2060
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -2
Query: 225 FDAGFPEDPRDLVXHVSGVHLAGHLELHGTNVNFTAKSPKVRFLDXMHAGQAHDARVE 52
FD GFP+ +D+ H SGV + L G N + T S ++R G +D R E
Sbjct: 1084 FD-GFPKLSQDV--HASGVERCDKIPLDGANGSATVTSNELRRTPCNANGNKYDIRPE 1138
>SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -2
Query: 219 AGFPEDPRDLVXHVSGVHL--AGHLELHGTN 133
+GFP P+D + H++G+ L AGHL + T+
Sbjct: 338 SGFPLKPKDHLPHLTGLELQSAGHLTCNVTS 368
>SB_43105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 478 ILFLY*HNLFSLYTIKPTVWTL 413
I + + + LF YTI PT+WTL
Sbjct: 81 IEYCHANKLFRPYTINPTIWTL 102
>SB_33791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -2
Query: 240 LYGEMFDAGFPEDPRDLVXHVSGVHLAGHLELHGTNVNFTAKSPK--VRFLDXMHAGQAH 67
L+ E+F F ED +L H+SG L + V + K VRFL+
Sbjct: 38 LFRELFVGAFREDVSELPNHLSGFRLQVYTICCTRAVGRLMGNLKCFVRFLNSFSKSICT 97
Query: 66 DARVETGQRAL 34
DA TG A+
Sbjct: 98 DANASTGAGAV 108
>SB_53635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 478 ILFLY*HNLFSLYTIKPTVWTL 413
I + + + LF YTI PT+WTL
Sbjct: 159 IEYCHANKLFLPYTINPTIWTL 180
>SB_47486| Best HMM Match : Mic1 (HMM E-Value=7.8)
Length = 263
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 478 ILFLY*HNLFSLYTIKPTVWTL 413
I + + + LF YTI PT+WTL
Sbjct: 216 IEYCHANKLFLPYTINPTIWTL 237
>SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 144 HGTNVNFTAKSPKVRFLDXMHAGQAHDARVETGQRALQRGRSPLHEHP 1
HG + + +A P++ D H H +++TG L G + E P
Sbjct: 241 HGRHKSESATHPRIN--DIFHDNNVHPHKLDTGSVGLPNGHAHQSERP 286
>SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)
Length = 429
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 490 LHHIILFLY*HNLFSLYTIKPTVW 419
L+HI+ Y NL + Y + PTVW
Sbjct: 330 LYHIVDNKYRRNLKAFYIVHPTVW 353
>SB_16610| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=9.3)
Length = 113
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 478 ILFLY*HNLFSLYTIKPTVWTL 413
I + + + LF YTI PT+WTL
Sbjct: 10 IEYCHANKLFLPYTINPTIWTL 31
>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 490 LHHIILFLY*HNLFSLYTIKPTVW 419
L+HI+ Y NL + Y + PTVW
Sbjct: 40 LYHIVDNKYRRNLKAFYIVHPTVW 63
>SB_38118| Best HMM Match : TBCA (HMM E-Value=3.2)
Length = 675
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 478 ILFLY*HNLFSLYTIKPTVWTL 413
I + + + LF YTI PT+WTL
Sbjct: 628 IEYCHANKLFLPYTINPTIWTL 649
>SB_18108| Best HMM Match : HA (HMM E-Value=0.059)
Length = 282
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 478 ILFLY*HNLFSLYTIKPTVWTL 413
I + + + LF YTI PT+WTL
Sbjct: 235 IEYCHANKLFLPYTINPTIWTL 256
>SB_14219| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=5.8)
Length = 277
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 478 ILFLY*HNLFSLYTIKPTVWTL 413
I + + + LF YTI PT+WTL
Sbjct: 230 IEYCHANKLFLPYTINPTIWTL 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,432,117
Number of Sequences: 59808
Number of extensions: 281368
Number of successful extensions: 597
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -