Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30079
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    32   0.25 
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    32   0.25 
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    31   0.76 
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    31   0.76 
Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/78 (21%), Positives = 35/78 (44%)
 Frame = +1

Query: 7   LMQRTPTSLERALPSLYTRVVGLAGVHXVQEPHFWTLCSEIHVGAMKLEVAREVDPRYVT 186
           L+++TP  L+  L  +   +  + GV  V++   WTLC +  + A  + +          
Sbjct: 448 LLKQTPEGLD--LEKVKKDLCSIVGVSKVEKLSVWTLCGQRIIAAAHVNICHPAVFPEAA 505

Query: 187 XQVARIFREAGVKHLTVQ 240
            ++   F + GV   T++
Sbjct: 506 YKIKNYFHDLGVHSTTIE 523


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/78 (21%), Positives = 35/78 (44%)
 Frame = +1

Query: 7   LMQRTPTSLERALPSLYTRVVGLAGVHXVQEPHFWTLCSEIHVGAMKLEVAREVDPRYVT 186
           L+++TP  L+  L  +   +  + GV  V++   WTLC +  + A  + +          
Sbjct: 406 LLKQTPEGLD--LEKVKKDLCSIVGVSKVEKLSVWTLCGQRIIAAAHVNICHPAVFPEAA 463

Query: 187 XQVARIFREAGVKHLTVQ 240
            ++   F + GV   T++
Sbjct: 464 YKIKNYFHDLGVHSTTIE 481


>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical protein
            F01G4.1 protein.
          Length = 1474

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 248  ILPLIRLTDHKSYLGFNARENWRGFRTFLDTVRLIRVKIDAVSKYHRVCAVLDAFQSPHS 427
            ILP ++ T H+  + F        F  FL+  R   +++D  +K      +L  F +P+S
Sbjct: 858  ILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNS 917

Query: 428  GLY 436
             L+
Sbjct: 918  DLF 920


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical protein
            F01G4.1 protein.
          Length = 1474

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 248  ILPLIRLTDHKSYLGFNARENWRGFRTFLDTVRLIRVKIDAVSKYHRVCAVLDAFQSPHS 427
            ILP ++ T H+  + F        F  FL+  R   +++D  +K      +L  F +P+S
Sbjct: 858  ILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNS 917

Query: 428  GLY 436
             L+
Sbjct: 918  DLF 920


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
            protein protein.
          Length = 1474

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 248  ILPLIRLTDHKSYLGFNARENWRGFRTFLDTVRLIRVKIDAVSKYHRVCAVLDAFQSPHS 427
            ILP ++ T H+  + F        F  FL+  R   +++D  +K      +L  F +P+S
Sbjct: 858  ILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNS 917

Query: 428  GLY 436
             L+
Sbjct: 918  DLF 920


>Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical
           protein C54G4.7 protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 323 RTFLDTVRLIRVKIDAVSKYHR--VCAVLDAFQSPHSGLY 436
           R  +D V+ +  KID V KY +  V +    F SPH+ L+
Sbjct: 53  RLVMDYVKELNPKIDIVKKYSKNGVTSYEGFFASPHATLF 92


>U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical
           protein C18B2.5b protein.
          Length = 699

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 240 LYGEMFDAGFPEDPRDLVXHVSGVHLAGHLELH 142
           LYGE  ++   E P     HVS  H+  H+  H
Sbjct: 128 LYGEDHESIVSEPPFQAPSHVSSSHVTSHVSSH 160


>U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical
           protein C18B2.5a protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 240 LYGEMFDAGFPEDPRDLVXHVSGVHLAGHLELH 142
           LYGE  ++   E P     HVS  H+  H+  H
Sbjct: 128 LYGEDHESIVSEPPFQAPSHVSSSHVTSHVSSH 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,251,771
Number of Sequences: 27780
Number of extensions: 206174
Number of successful extensions: 412
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)