Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30079
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.6  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 245 SSCTVRCLTPASLKILATWXVTYRGSTSRATSSFMAPT*ISL-QRVQKCGSWTXCT 81
           S C+VRC   + L+    W   +R S         A    +L +RV+  G W   T
Sbjct: 17  SRCSVRCSAASGLR----WFEIWRDSLPTKMRELNATACAALYERVEWSGPWILVT 68


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 199 RIFREAGVKHLTVQLDYSPFDKTNRSQI 282
           ++F+E G  +LT + D  PF +     I
Sbjct: 104 KLFKEWGTTNLTFEEDPEPFGRVRDHNI 131


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 82  VHXVQEPHFWTLCSEIHVGAMKLEV 156
           +H  + PH  T+CS+  + + +L +
Sbjct: 169 IHTGERPHKCTVCSKTFIQSGQLVI 193


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 351 INLTVSRNVRNP 316
           +NLTV  N RNP
Sbjct: 413 LNLTVENNRRNP 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,642
Number of Sequences: 438
Number of extensions: 2240
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)