Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30076
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.5  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   4.4  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   5.8  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    25   7.6  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 509 LKFILSSMELFYRNLWLRCLLVTNFKN*IKFIQQLLSDSY 628
           L F L+ +E+FY      CLL   F   +  I  LLSD Y
Sbjct: 810 LTFELAFLEIFYE--LFNCLLHLQFSKYLVIIGTLLSDKY 847


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 469 KNVINLQMLKLVYFF*TFRSCLQSLYEGIVNRHN 368
           KN + +  LK + FF T  SC ++L + I + HN
Sbjct: 435 KNDLYINWLKSLSFFQTNSSCAEALVKVIPHYHN 468


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 178 YILLPGQFNLIYWYIRLYTIKKIHKIVAR*CIGMFD 71
           Y+  PG  +L+ + +RL +++++H+I    C+ M D
Sbjct: 418 YLTNPGSLSLLEYLLRLCSLQELHQIS---CLEMTD 450


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +3

Query: 48  RPSILNAISNMPI-----HYL-ATILCIFLIVYNLIYQYIKL 155
           R +ILNAISN P      H L  TI+CI ++  + + + +++
Sbjct: 31  RRAILNAISNSPFAGRVKHVLKITIICILILFADSVRRVVRV 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,740
Number of Sequences: 5004
Number of extensions: 49163
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)