Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30076
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51)                     29   2.6  
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 29   3.5  
SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51)
          Length = 407

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = +1

Query: 400 FVNSFGMFKKNILTLTSVSLLHFFIIHNLFIGAPISFEIHIIFNGIVL 543
           F+  + +F  N L + +   +HF ++  +F GAP  + + ++F   ++
Sbjct: 283 FIVHWVVFGVNCLAVFAFDAMHFSLLSRVFRGAPAGYIVTVLFMNFLI 330


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 84  IHYLATILCIFLIVYNLIYQYIKLNCP 164
           I+Y+  + C  + VYN  + Y K N P
Sbjct: 320 IYYILLVFCAVIFVYNCAWTYTKFNRP 346


>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 43  GDALRF*TLYQTCRYIISQRFCVFS*LYITLYTNIL--N*IVQVIKYNIGFKIVQRNCM 213
           G    F  +  TC +I+ +  CVF+ + +T   N++    +  VIK    F +++  C+
Sbjct: 104 GQGTLFNVIKVTCVFIVIKVTCVFNVIKVTCVFNVIKVTCVFNVIKVTCVFNVIKVTCV 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,841,519
Number of Sequences: 59808
Number of extensions: 319127
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)