Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30076
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.2  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 624 LSDNSCWINLI*FLKFVTSRHLSHKFR*NNSIEDNM 517
           LS   C    + ++ F TS  +S KFR    IEDN+
Sbjct: 590 LSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDNV 625


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +1

Query: 388 LHISFVNSFGMFKKNILTLTSVSLLHFFIIHNLFIGAPISFEIHIIFNGIVLSKFMAKMP 567
           +HI     +G +    + +  ++++  +++  L    PIS  +H     +VL     + P
Sbjct: 125 IHIKDPLRYGRWVTRRIAVAGIAVV--WLLAGLISFVPISLGLHRANEPVVLDDSKEEHP 182

Query: 568 TC 573
           TC
Sbjct: 183 TC 184


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 624 LSDNSCWINLI*FLKFVTSRHLSHKFR*NNSIEDNM 517
           LS   C    + ++ F TS  +S KFR    IED++
Sbjct: 537 LSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDDV 572


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,806
Number of Sequences: 438
Number of extensions: 3805
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)