Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30075
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    34   0.084
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    34   0.084
At2g39750.1 68415.m04881 dehydration-responsive family protein s...    30   1.4  
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote...    29   1.8  
At3g51350.1 68416.m05622 aspartyl protease family protein contai...    29   1.8  
At5g64090.1 68418.m08049 expressed protein                             29   3.2  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    29   3.2  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    28   5.5  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   5.5  
At4g37210.1 68417.m05268 tetratricopeptide repeat (TPR)-containi...    27   9.6  

>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 33.9 bits (74), Expect = 0.084
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 308 PPRGPSLGPAHPGLSYPV--ADFFDAPQSRWNE 216
           P +GP   P  PGL +P+  + FF  P  RWN+
Sbjct: 262 PSQGPPQPPPSPGLMFPLSPSGFFPMPSPRWND 294


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 33.9 bits (74), Expect = 0.084
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 308 PPRGPSLGPAHPGLSYPV--ADFFDAPQSRWNE 216
           P +GP   P  PGL +P+  + FF  P  RWN+
Sbjct: 369 PSQGPPQPPPSPGLMFPLSPSGFFPMPSPRWND 401


>At2g39750.1 68415.m04881 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 694

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +2

Query: 227 EIGERQRSQPPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGPVCAF 370
           EI    R QPP + A  E  + +V    PPP        PP GPV +F
Sbjct: 82  EIPATIRQQPPSVVADTE--KVKVEANPPPPPPPSPSPPPPPGPVKSF 127


>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 812

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 289 SDQLTRGSHIRWLTSLTLPNLVGMNGRLAQSAFIHTVTKTI 167
           S Q  RG H+ W+  L  P+L+G  G   Q++  H    TI
Sbjct: 527 SSQSIRG-HLDWMAKLNHPHLLGFLGHCTQTSGEHDPVATI 566


>At3g51350.1 68416.m05622 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
 Frame = +2

Query: 80  FRIKTISYAVRWCL-YLDSVG---NVKRKGFCLYSFSDCMDKSRL----RQSTVHSNEIG 235
           F  +T    V +CL  L SVG   NV  + F +  +    D+ R+    +QS    +E  
Sbjct: 400 FTARTQEGNVMYCLGVLKSVGLKINVIGQNF-VAGYRIVFDRERMILGWKQSLCFEDESL 458

Query: 236 ERQRSQPPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGP 358
           E     PP++ AP   V A     +PP + A     PP  P
Sbjct: 459 ESTTPPPPEVEAPAPSVSAPPPRSLPPTVSA---TPPPINP 496


>At5g64090.1 68418.m08049 expressed protein 
          Length = 448

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 435 SRHETASSSHRVANVLRVPAASKAHTG--PAGGATHRPAHSGGGTPSRTLARTSSPGALI 262
           S   ++S+ HR  +V    A + A +G  P+  A   P HS   + S+  +R  S  +L+
Sbjct: 15  SSSTSSSTPHRFKSVTTPTATAAAVSGFSPSAAADRDPMHSWWESVSKQRSRILSLSSLL 74

Query: 261 SG 256
           SG
Sbjct: 75  SG 76


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 477 IQQTPKLVTA*YVLSRHETASSSHRVAN-VLRVPAASKAHTGPAGGATHRPAHSGGGTPS 301
           I  TP L  +        T S S +  + V   P+ S AHT P+    H P+HS    PS
Sbjct: 188 ISHTPALSPSHATSHSPATPSPSPKSPSPVSHSPSHSPAHT-PSHSPAHTPSHSPAHAPS 246

Query: 300 RTLARTSS 277
            + A   S
Sbjct: 247 HSPAHAPS 254



 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 417 SSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 277
           S SH  A+    P+ S AHT P+    H P+HS    PS + A   S
Sbjct: 220 SPSHSPAHT---PSHSPAHT-PSHSPAHAPSHSPAHAPSHSPAHAPS 262



 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 381 PAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSP 274
           P+ S AH  P+    H P+HS   +PS + A   SP
Sbjct: 245 PSHSPAHA-PSHSPAHAPSHSPAHSPSHSPATPKSP 279


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 350 PAGPRTALHTA-AVAPPRGPSLGPAHPGLSYPVAD 249
           P+ P + LH+  + APPR     P HP LS  V +
Sbjct: 267 PSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDVTN 301


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 366 AHTGPAGGATHRPAHSGGGTPSRTLARTSS 277
           A + PA GA+  PA  G  TPS   + TSS
Sbjct: 262 ASSTPAFGASSTPAFGGSSTPSFGASNTSS 291


>At4g37210.1 68417.m05268 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q02508 Protein HGV2
           Halocynthia roretzi; contains Pfam profile PF00515 TPR
           Domain
          Length = 492

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = -2

Query: 462 KLVTA*YVLSRHETASSSHRVANVLRVPAASKAHTGPA-GGATHRPAHSG--GGTPSRTL 292
           K+V A   +S     + +      L  P  S AHTG A GGA     H G  G    R L
Sbjct: 406 KVVPAAAEMSSSRMGTVNTNFGKDLESPTVSTAHTGAAGGGAASGVTHLGVVGRGVKRVL 465

Query: 291 ARTSS 277
             T+S
Sbjct: 466 MNTTS 470


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,312
Number of Sequences: 28952
Number of extensions: 313230
Number of successful extensions: 949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)