Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30074
(726 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 154 2e-36
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 154 2e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 140 4e-32
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 125 2e-31
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 122 7e-27
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 118 1e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 115 1e-24
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 114 2e-24
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 113 3e-24
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 110 4e-23
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 96 7e-19
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 86 7e-16
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 66 1e-09
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 65 2e-09
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 62 1e-08
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 60 4e-08
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 59 1e-07
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 58 3e-07
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 57 4e-07
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 57 4e-07
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 56 1e-06
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 55 2e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 53 8e-06
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 49 1e-04
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 49 1e-04
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 48 2e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 3e-04
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 47 4e-04
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 47 5e-04
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 45 0.002
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 45 0.002
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 45 0.002
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 40 0.047
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 38 0.33
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 36 0.77
UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1; L... 35 2.4
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 34 4.1
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
UniRef50_Q293C6 Cluster: GA20855-PA; n=1; Drosophila pseudoobscu... 33 5.4
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 154 bits (373), Expect = 2e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 71 KVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLI 502
G K VP+LVTHDGRTIRYPDPLI
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLI 154
Score = 139 bits (336), Expect = 7e-32
Identities = 62/80 (77%), Positives = 71/80 (88%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P ++DS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVH
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVH 209
Query: 667 IKDSTGHTFATRLNNVFIIG 726
IKDS GH FATRL NVFIIG
Sbjct: 210 IKDSQGHVFATRLTNVFIIG 229
Score = 128 bits (310), Expect = 1e-28
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 222 VLKIVKQR 245
V KIV QR
Sbjct: 61 VTKIVMQR 68
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 154 bits (373), Expect = 2e-36
Identities = 67/86 (77%), Positives = 76/86 (88%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
K+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++
Sbjct: 71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIF 130
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIKV 508
G K +P+LVTHD RTIRYPDPLIKV
Sbjct: 131 VGTKGIPHLVTHDARTIRYPDPLIKV 156
Score = 127 bits (307), Expect = 2e-28
Identities = 58/68 (85%), Positives = 62/68 (91%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 222 VLKIVKQR 245
V KI QR
Sbjct: 61 VKKICMQR 68
Score = 126 bits (303), Expect = 7e-28
Identities = 51/80 (63%), Positives = 69/80 (86%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P + +D+IQ+D+ T KI DFIKF++GNLCM+TGG NLGR+G I +RERHPGSFD+VH
Sbjct: 150 PDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH 209
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+KD+ G++FATRL+N+F+IG
Sbjct: 210 VKDANGNSFATRLSNIFVIG 229
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 140 bits (338), Expect = 4e-32
Identities = 63/85 (74%), Positives = 71/85 (83%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ +
Sbjct: 71 QVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQ 130
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIK 505
G K +PYL T+DGRTIRYPDPLIK
Sbjct: 131 FGQKGIPYLNTYDGRTIRYPDPLIK 155
Score = 117 bits (281), Expect = 3e-25
Identities = 52/68 (76%), Positives = 59/68 (86%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 222 VLKIVKQR 245
V+ I+ QR
Sbjct: 61 VISILMQR 68
Score = 109 bits (262), Expect = 7e-23
Identities = 47/80 (58%), Positives = 63/80 (78%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P + +D+I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIH 209
Query: 667 IKDSTGHTFATRLNNVFIIG 726
I+DSTGH FATRL NV+ IG
Sbjct: 210 IQDSTGHEFATRLGNVYTIG 229
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 125 bits (302), Expect = 1e-27
Identities = 57/67 (85%), Positives = 61/67 (91%)
Frame = +3
Query: 45 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 224
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 225 LKIVKQR 245
KI QR
Sbjct: 62 KKICMQR 68
Score = 123 bits (297), Expect = 4e-27
Identities = 49/80 (61%), Positives = 69/80 (86%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P + +D++++D+ T KI DFIKF++ N+CM+TGG NLGR+G I +RERHPGSFD+VH
Sbjct: 182 PDPLIKVNDTVRIDLDTGKITDFIKFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVH 241
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+KDSTG++FATRL+N+F+IG
Sbjct: 242 VKDSTGNSFATRLSNIFVIG 261
Score = 92.3 bits (219), Expect(2) = 2e-31
Identities = 41/50 (82%), Positives = 45/50 (90%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 400
K+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 71 KIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 66.5 bits (155), Expect(2) = 2e-31
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +2
Query: 398 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 508
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKV
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKV 188
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 122 bits (295), Expect = 7e-27
Identities = 49/80 (61%), Positives = 67/80 (83%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P + +D+IQ+D+ T KI DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH
Sbjct: 122 PDPLIKMNDTIQIDLETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVH 181
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+KD+ G++FATRL+N+F+IG
Sbjct: 182 VKDANGNSFATRLSNIFVIG 201
Score = 115 bits (276), Expect = 1e-24
Identities = 52/67 (77%), Positives = 57/67 (85%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 222 VLKIVKQ 242
V KI Q
Sbjct: 61 VKKIRMQ 67
Score = 90.6 bits (215), Expect = 3e-17
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +2
Query: 350 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 508
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKM 128
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 118 bits (285), Expect = 1e-25
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
VDGKVR D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A
Sbjct: 184 VDGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAI 243
Query: 434 GPKNVPYLVTHDGRTIRYPDPLIKV 508
GP +PY+VTHD RTIR+P+P IK+
Sbjct: 244 GPNQIPYIVTHDSRTIRFPNPEIKI 268
Score = 92.3 bits (219), Expect = 1e-17
Identities = 39/80 (48%), Positives = 54/80 (67%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P + D+++ D+ KI +F ESGN+C I G N+GRVG I E+H GSFDI H
Sbjct: 262 PNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICH 321
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+KD+ G+ FATRL N+F++G
Sbjct: 322 VKDAKGNAFATRLGNIFVLG 341
Score = 65.3 bits (152), Expect = 1e-09
Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 29/96 (30%)
Frame = +3
Query: 45 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 146
ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 147 ---HKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 245
HKLRE LPL + L+ RL YAL G +V I+ +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDK 178
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 115 bits (277), Expect = 1e-24
Identities = 51/84 (60%), Positives = 66/84 (78%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+
Sbjct: 72 VDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSI 131
Query: 434 GPKNVPYLVTHDGRTIRYPDPLIK 505
G K +PY+VTHDGRTIR+P+ LIK
Sbjct: 132 GSKGIPYIVTHDGRTIRFPNLLIK 155
Score = 93.1 bits (221), Expect = 6e-18
Identities = 40/67 (59%), Positives = 53/67 (79%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 222 VLKIVKQ 242
L I+K+
Sbjct: 61 SLNILKK 67
Score = 77.0 bits (181), Expect = 4e-13
Identities = 34/80 (42%), Positives = 52/80 (65%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P +S+DSI LD+ K++DFIKF G+LC++ G N+GR+G ++ GS IV
Sbjct: 150 PNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVC 209
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+KD G +F+T+ N+F+IG
Sbjct: 210 LKDFNGSSFSTQTKNLFVIG 229
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 114 bits (274), Expect = 2e-24
Identities = 49/86 (56%), Positives = 64/86 (74%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V +
Sbjct: 85 KVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFK 144
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIKV 508
G K +P++VTHDGRTI Y DP ++V
Sbjct: 145 IGAKGIPHVVTHDGRTISYVDPSVRV 170
Score = 92.3 bits (219), Expect = 1e-17
Identities = 43/68 (63%), Positives = 50/68 (73%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E
Sbjct: 15 MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKE 74
Query: 222 VLKIVKQR 245
+ IVK+R
Sbjct: 75 AVAIVKRR 82
Score = 87.8 bits (208), Expect = 2e-16
Identities = 38/78 (48%), Positives = 57/78 (73%)
Frame = +1
Query: 493 PTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIK 672
P+ + HD+++ +I T ++ IKF+ G++ M+T G N+GRVGTI E+ SFDIVH+K
Sbjct: 166 PSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLK 225
Query: 673 DSTGHTFATRLNNVFIIG 726
D++G FATR+ NVF+IG
Sbjct: 226 DTSGAVFATRIMNVFVIG 243
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 113 bits (273), Expect = 3e-24
Identities = 49/80 (61%), Positives = 64/80 (80%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P Q++D+I+L++ T KI+DF+KF+ GN M+ GG +GRVG IV RE HPGSF+IVH
Sbjct: 150 PHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVH 209
Query: 667 IKDSTGHTFATRLNNVFIIG 726
IKD+ G+TF TRLNNVF+IG
Sbjct: 210 IKDAKGNTFTTRLNNVFVIG 229
Score = 113 bits (272), Expect = 4e-24
Identities = 48/82 (58%), Positives = 63/82 (76%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
K+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++
Sbjct: 71 KIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRV 130
Query: 431 TGPKNVPYLVTHDGRTIRYPDP 496
G +PY+VTHDGRTIRYP P
Sbjct: 131 LGTGAIPYIVTHDGRTIRYPHP 152
Score = 109 bits (261), Expect = 9e-23
Identities = 47/68 (69%), Positives = 54/68 (79%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 222 VLKIVKQR 245
V IVK R
Sbjct: 61 VTMIVKNR 68
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 110 bits (264), Expect = 4e-23
Identities = 49/86 (56%), Positives = 62/86 (72%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
KVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++
Sbjct: 81 KVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIF 140
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIKV 508
K +P+LV HD T+R+PD LIKV
Sbjct: 141 VRAKGIPHLVIHDIHTVRHPDSLIKV 166
Score = 102 bits (244), Expect = 1e-20
Identities = 50/70 (71%), Positives = 58/70 (82%)
Frame = +3
Query: 33 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 212
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67
Query: 213 GNEVLKIVKQ 242
G+EV KI Q
Sbjct: 68 GDEVKKICMQ 77
Score = 79.8 bits (188), Expect = 6e-14
Identities = 34/70 (48%), Positives = 51/70 (72%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P + +D+IQ+D+ T KI +KF++GNLC++TGG N GR+G I +RERHP SFD H
Sbjct: 160 PDSLIKVNDTIQIDLETGKITA-LKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFH 218
Query: 667 IKDSTGHTFA 696
+KD+ ++F+
Sbjct: 219 VKDANSNSFS 228
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 96.3 bits (229), Expect = 7e-19
Identities = 43/62 (69%), Positives = 49/62 (79%)
Frame = +3
Query: 57 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 236
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 237 KQ 242
+Q
Sbjct: 63 RQ 64
Score = 96.3 bits (229), Expect = 7e-19
Identities = 46/81 (56%), Positives = 53/81 (65%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T
Sbjct: 69 VDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYT 128
Query: 434 GPKNVPYLVTHDGRTIRYPDP 496
VP VTHDG IRYPDP
Sbjct: 129 ATGRVPVAVTHDGHRIRYPDP 149
Score = 79.8 bits (188), Expect = 6e-14
Identities = 36/80 (45%), Positives = 50/80 (62%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P D+I ++ K +D IK G ++TGG N GR+G IV E HPG+F+I H
Sbjct: 147 PDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFNIAH 206
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+KD++G FATR N+F+IG
Sbjct: 207 LKDASGAEFATRAANIFVIG 226
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 86.2 bits (204), Expect = 7e-16
Identities = 41/84 (48%), Positives = 59/84 (70%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
KV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 71 KVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKY 130
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLI 502
+ +PY+V+ G +IR+ DP I
Sbjct: 131 EN-QGIPYIVSSCGLSIRFCDPAI 153
Score = 69.7 bits (163), Expect = 7e-11
Identities = 31/68 (45%), Positives = 43/68 (63%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 222 VLKIVKQR 245
+ I+ ++
Sbjct: 61 LSIILAEK 68
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/64 (45%), Positives = 41/64 (64%)
Frame = +3
Query: 48 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 227
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 228 KIVK 239
KI++
Sbjct: 64 KIIQ 67
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/76 (34%), Positives = 38/76 (50%)
Frame = +1
Query: 499 YQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 678
Y++ DS+ + I I + F G L ITGG+++G IV E DIV +++
Sbjct: 161 YKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENK 220
Query: 679 TGHTFATRLNNVFIIG 726
G F T VFI+G
Sbjct: 221 DGEKFKTVKPYVFIVG 236
Score = 47.6 bits (108), Expect = 3e-04
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRV 427
+DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V
Sbjct: 73 IDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTV 130
Query: 428 ATGPKNVPYLVTHDGR 475
G N+ L HDGR
Sbjct: 131 VKG-GNI-QLNLHDGR 144
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +3
Query: 51 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 227
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 228 KIV 236
KI+
Sbjct: 67 KII 69
Score = 58.0 bits (134), Expect = 2e-07
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K
Sbjct: 76 VDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTY 135
Query: 434 GPKNVPYLVTHDGRT--IRYPDP 496
+ HDG+ + DP
Sbjct: 136 VRGGNLQITMHDGKNWLVEIEDP 158
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 62.5 bits (145), Expect = 1e-08
Identities = 30/76 (39%), Positives = 46/76 (60%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T
Sbjct: 73 VDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKST 130
Query: 434 GPKNVPYLVTHDGRTI 481
+ HDG+ +
Sbjct: 131 IKGGKIQVNLHDGKNV 146
Score = 47.2 bits (107), Expect = 4e-04
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 51 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 230
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 231 IV 236
I+
Sbjct: 65 II 66
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 499 YQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT----IVSRERHPGSFDIVH 666
Y D I L + +I + + + G +ITGG++ G +GT IV+ +P + +
Sbjct: 153 YNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNT---II 209
Query: 667 IKDSTGHTFATRLNNVFIIG 726
I++S F T + F++G
Sbjct: 210 IENSAKDEFLTLKDYAFVVG 229
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 60.5 bits (140), Expect = 4e-08
Identities = 34/86 (39%), Positives = 45/86 (52%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 67 KVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKV 124
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIKV 508
P N L THDGRT D KV
Sbjct: 125 IAPGNRIQLGTHDGRTFITDDKSKKV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 58.8 bits (136), Expect = 1e-07
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 472 PHHPLPRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG- 648
P +P+ Y++ D++ + + +I IKF G + +I GGRN+GRVG + S ++ G
Sbjct: 155 PRNPV-EDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGR 213
Query: 649 SFDIVHIKDSTGHTFATRLNNVFIIG 726
+V ++D++G+ F T L+ VF+IG
Sbjct: 214 KRTLVTLEDASGNLFQTSLDYVFVIG 239
Score = 57.2 bits (132), Expect = 4e-07
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRV 427
+VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++
Sbjct: 72 RVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENK 130
Query: 428 ATGPKNVPYLVTHDGRTI--RYPDP 496
T L HDGR I R DP
Sbjct: 131 TTVKGGHVQLNLHDGRNILVRVKDP 155
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 42 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 218
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 219 EVLKIVKQ 242
E K++ +
Sbjct: 61 EARKLISE 68
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 57.6 bits (133), Expect = 3e-07
Identities = 31/77 (40%), Positives = 39/77 (50%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 66 KVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKT 125
Query: 431 TGPKNVPYLVTHDGRTI 481
L HDGR I
Sbjct: 126 MVKAGKIQLNLHDGRNI 142
Score = 48.0 bits (109), Expect = 2e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 236
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLII 60
Score = 36.3 bits (80), Expect = 0.77
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +1
Query: 499 YQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 678
Y++ S+ +++ K+MD+ + + G N+GR GT+++ R D + +
Sbjct: 152 YETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSFRKRDAIATVKA 211
Query: 679 TGHTFATRLNNVFIIG 726
F T LN + +IG
Sbjct: 212 KDSEFRTVLNYLLVIG 227
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 57.2 bits (132), Expect = 4e-07
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRV 427
KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK+
Sbjct: 68 KVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKT 127
Query: 428 ATGPKNVPYLVTHDGRTI 481
G + L HDG+TI
Sbjct: 128 IIGTGKI-QLGFHDGKTI 144
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R
Sbjct: 74 EVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKM 133
Query: 431 TGPKNVPYLVTHDGRTI 481
T HDGR +
Sbjct: 134 TVKNGDLQFTLHDGRNV 150
Score = 50.0 bits (114), Expect = 6e-05
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +3
Query: 33 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 212
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 213 GNEVLKIVKQR 245
E +I+ R
Sbjct: 61 MKEARRILASR 71
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 63 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 239
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 240 Q 242
+
Sbjct: 63 R 63
Score = 54.0 bits (124), Expect = 4e-06
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+
Sbjct: 67 KVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKT 126
Query: 431 TGPKNVPYLVTHDGRTI 481
L HDGR +
Sbjct: 127 MVKGGRIQLHFHDGRNL 143
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 55.2 bits (127), Expect = 2e-06
Identities = 32/76 (42%), Positives = 38/76 (50%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++ T
Sbjct: 67 VDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTT 126
Query: 434 GPKNVPYLVTHDGRTI 481
V L DGR I
Sbjct: 127 LKSGVLQLNLEDGRNI 142
Score = 37.5 bits (83), Expect = 0.33
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 236
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRII 60
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 52.8 bits (121), Expect = 8e-06
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVA 430
VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+
Sbjct: 73 VDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVS 132
Query: 431 TGPKNVPYLVTHDGRT 478
+ Y +T DGRT
Sbjct: 133 VRGGKIQYTLT-DGRT 147
Score = 41.5 bits (93), Expect = 0.021
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 57 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 224
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREV 62
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 49.2 bits (112), Expect = 1e-04
Identities = 28/80 (35%), Positives = 41/80 (51%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V +T
Sbjct: 69 VDGRIETDLGRGVGLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKST 126
Query: 434 GPKNVPYLVTHDGRTIRYPD 493
+ HDGR I D
Sbjct: 127 ITDGKTQIHLHDGRNILVSD 146
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 242
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 243 R 245
R
Sbjct: 65 R 65
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++ T
Sbjct: 67 VDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTT 125
Query: 434 GPKNVPYLVTHDGRTI 481
L +DG I
Sbjct: 126 VKGGKIQLNLNDGTNI 141
Score = 42.3 bits (95), Expect = 0.012
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 499 YQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKD 675
Y + DS+ L I ++ +KFE GNL M+ GG++ G G I+ RE + V I
Sbjct: 147 YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISG 206
Query: 676 STGHTFATRLNNVFIIG 726
T F T + V +IG
Sbjct: 207 ET--DFETIEDYVIVIG 221
Score = 41.5 bits (93), Expect = 0.021
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 242
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 69 VDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTA 126
Query: 434 GPKNVPYLVTHDGRTI 481
L HDG T+
Sbjct: 127 LRGGKIQLNLHDGTTM 142
Score = 46.8 bits (106), Expect = 5e-04
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 242
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
V+GK +P MD +S N+ +R++ G+ T++ I E K+CKV ++
Sbjct: 72 VNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIIN 131
Query: 434 GPKNVPYLVTHDGRTIRYPDPLIKV 508
++T D R ++ IKV
Sbjct: 132 ASSKNKIIITDDLRELKINYAKIKV 156
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +1
Query: 511 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHT 690
DS+ + +I+ +KFE G+LC+IT G++LG + I + ++H++ G
Sbjct: 158 DSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKK 217
Query: 691 FATRLNNVFIIG 726
+ +++ +IG
Sbjct: 218 LTKKCSDLLVIG 229
Score = 37.5 bits (83), Expect = 0.33
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 222 VLKIVK 239
K+VK
Sbjct: 61 AQKVVK 66
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Frame = +1
Query: 496 TYQSHDSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSF-- 654
TY++ DS+ + + T +I+D + GN+ MI GG++ G+VG IV R S
Sbjct: 147 TYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRIVEIIRTASSVPN 206
Query: 655 DIVHIKDSTGHTFATRLNNVFIIG 726
++ DS G F T VF++G
Sbjct: 207 HVILTDDSAGERFETIEEYVFMVG 230
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK++ T
Sbjct: 67 VNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTT 126
Score = 43.2 bits (97), Expect = 0.007
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +3
Query: 60 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 239
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 240 QR 245
QR
Sbjct: 62 QR 63
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +3
Query: 69 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 245
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDR 62
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 66 LNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = -1
Query: 723 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHN 544
D EHV + R + ++ GVL VHN EG + LA D V + DH Q ++LD + +
Sbjct: 53 DGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELDRIGD 112
Query: 543 LRSCNV*LDGIVTLISG 493
L +V +G+ L G
Sbjct: 113 LVRRDVDHNGVTLLDHG 129
Score = 33.9 bits (74), Expect = 4.1
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = -3
Query: 502 DKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFIS 323
D + V +GAA+++ R+ L QLVL D V ES+L ++D + FI+
Sbjct: 127 DHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIA 186
Query: 322 LLN*DNI 302
L + D++
Sbjct: 187 LFDGDDV 193
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 499 YQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 624
Y + DSI L + K++ IK+E GNL MI GG + G VG+I
Sbjct: 148 YNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
Score = 42.3 bits (95), Expect = 0.012
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 421
VDG R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 68 VDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Score = 39.9 bits (89), Expect = 0.063
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 197
H KR++ PK+W + K + GPH + +PL + LR+ L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +1
Query: 490 RPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE-RHPGSFDIVH 666
R ++ DS+ + I +I+D +KF GN ITGG ++G + TI S E + ++VH
Sbjct: 145 RKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVH 204
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+ + F+T + VF++G
Sbjct: 205 MNEG----FSTVSSYVFVMG 220
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 40.3 bits (90), Expect = 0.047
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +2
Query: 254 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 433
++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 67 INGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTH 126
Query: 434 GPKNVPYLVTHDGRTIRYPD 493
L HDG T+ D
Sbjct: 127 VSGGDVQLGLHDGETLIVED 146
Score = 37.1 bits (82), Expect = 0.44
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 206
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 37.5 bits (83), Expect = 0.33
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = -1
Query: 726 ADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEV 550
A+ EH+ Q + + G+L+V ++G + L D ++T V ++ H +P +K DEV
Sbjct: 118 ANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSHHDNIPNIKFDEV 176
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 36.3 bits (80), Expect = 0.77
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
+VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 72 EVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTSKT 131
Query: 431 TGPKNVPYLVTHDGRTI 481
+ + HDGR++
Sbjct: 132 SISGGRTQIGFHDGRSL 148
>UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1;
Lactobacillus plantarum|Rep: Acetyltransferase (GNAT)
family - Lactobacillus plantarum
Length = 163
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 420 SVWRPDLRMFRTW*RMMAAPSATQTHLSKSRFHPVRHCNYEDYG-LHQV*VWELVYDHG 593
+ WRP+ R W M+ A +A + F P RH NYE +G L+ + V + HG
Sbjct: 46 ATWRPE----RRWQNMLLAMTADGEVVGVCTFGPARHANYEGWGELYSLYVHPNYHHHG 100
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 33.9 bits (74), Expect = 4.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1
Query: 174 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAP 43
PG RAT GD + VSV T+R PTS+ W ++ N G P
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEP 135
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.5 bits (73), Expect = 5.4
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 229 FRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 59
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 58 LGPRAML 38
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_Q293C6 Cluster: GA20855-PA; n=1; Drosophila
pseudoobscura|Rep: GA20855-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1177
Score = 33.5 bits (73), Expect = 5.4
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +2
Query: 77 KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHKV 256
K QS+D + + T + Q + L G+ EE +V FDRK SP ET P K
Sbjct: 594 KVHQSLDESKMLALIEGATESTIVQSVQKLTAGEDSEEDDDV-FDRKDSPRFLETNPFKD 652
Query: 257 DGK 265
D +
Sbjct: 653 DAQ 655
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 33.1 bits (72), Expect = 7.2
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 510 RFHPVRHCNYEDYGLHQV*VWELVY--DHGRP*LGACGHHRVPRETSRLLRHCAHQGLHG 683
+ HP+R Y G+ V +LV DH R A HR R RL + H+G+
Sbjct: 35 KIHPLRIA-YRT-GIDVTLVQQLVSGEDHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQ 92
Query: 684 THLRHEVEQ 710
L+H++EQ
Sbjct: 93 AELQHKIEQ 101
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 794,060,097
Number of Sequences: 1657284
Number of extensions: 17312428
Number of successful extensions: 54008
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 51143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53972
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -