Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30074
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 158 7e-40
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 157 2e-39
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 157 2e-39
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.89
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 28 1.6
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.6
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 8.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.3
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 25 8.3
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 158 bits (384), Expect = 7e-40
Identities = 70/86 (81%), Positives = 77/86 (89%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
KVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 71 KVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQ 130
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIKV 508
G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIKV 156
Score = 113 bits (271), Expect = 3e-26
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 222 VLKIVKQR 245
V I+ QR
Sbjct: 61 VKAILMQR 68
Score = 102 bits (244), Expect = 6e-23
Identities = 45/80 (56%), Positives = 61/80 (76%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P + +D+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIH 209
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+KD+ FATRL+NVF+IG
Sbjct: 210 VKDALDREFATRLSNVFVIG 229
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 157 bits (381), Expect = 2e-39
Identities = 69/86 (80%), Positives = 77/86 (89%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
KVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 71 KVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQ 130
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIKV 508
G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIKV 156
Score = 113 bits (271), Expect = 3e-26
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 222 VLKIVKQR 245
V I+ QR
Sbjct: 61 VKAILMQR 68
Score = 102 bits (244), Expect = 6e-23
Identities = 45/80 (56%), Positives = 61/80 (76%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P + +D+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIH 209
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+KD+ FATRL+NVF+IG
Sbjct: 210 VKDALDREFATRLSNVFVIG 229
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 157 bits (380), Expect = 2e-39
Identities = 69/86 (80%), Positives = 77/86 (89%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 71 QVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQ 130
Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIKV 508
G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIKV 156
Score = 113 bits (271), Expect = 3e-26
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 222 VLKIVKQR 245
V I+ QR
Sbjct: 61 VKAILMQR 68
Score = 102 bits (244), Expect = 6e-23
Identities = 45/80 (56%), Positives = 61/80 (76%)
Frame = +1
Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
P P + +D+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIH 209
Query: 667 IKDSTGHTFATRLNNVFIIG 726
+KD+ FATRL+NVF+IG
Sbjct: 210 VKDALDREFATRLSNVFVIG 229
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 720 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 622
Y V+ P EG LD+H+ A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +2
Query: 170 PGDFPEESSEVCFDRKRSPENCETTPHKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 349
P D S++ +D K +P+N V + + D P ++ + K N+L +
Sbjct: 92 PDDSAWNSNDPYYDPKSTPQNPRWYSVGVQSEYKLDR--PVTLREL-KMHKENQLKSMEL 148
Query: 350 DVKGRFTIHRITPEEAKY 403
+ R +I R+ PEE K+
Sbjct: 149 LNRSRLSISRVKPEEWKF 166
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 559 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 663
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 302 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 478
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 479 IR 484
++
Sbjct: 1778 LK 1779
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +2
Query: 194 SEVCFDRKRSPENCETTPHKVDGKVRTDPTYPAGFMDVV-----SIEKTNELFR--LIYD 352
SE F P N P +DG +T+ +YP V +I T E++ L+YD
Sbjct: 597 SESVFKVAVEPHNPSELPKLLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYD 656
Query: 353 VKGRFTIHRITPEEAKYKLCK 415
++ ++ I + + C+
Sbjct: 657 LRTLYSEIEIRVSDPVARFCE 677
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 397 SLLRGDTVDCESALNIID*TKQ 332
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK-RV 427
K+ +R + +P + +I + F + G + +I K LC V
Sbjct: 18 KLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDV 77
Query: 428 ATGPKNVPYLVTHDGR 475
T PKN Y+V GR
Sbjct: 78 HTDPKNTEYIVASGGR 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,654
Number of Sequences: 5004
Number of extensions: 68096
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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