Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30074
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   2e-35
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   5.1  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   6.7  
SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)            28   8.9  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  146 bits (353), Expect = 2e-35
 Identities = 66/86 (76%), Positives = 74/86 (86%)
 Frame = +2

Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
           K+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV 
Sbjct: 495 KIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVD 554

Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIKV 508
            G K VPY+VTHD RTIRYPDP IKV
Sbjct: 555 VGAKGVPYIVTHDARTIRYPDPNIKV 580



 Score =  134 bits (323), Expect = 9e-32
 Identities = 60/68 (88%), Positives = 63/68 (92%)
 Frame = +3

Query: 42  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 222 VLKIVKQR 245
           V KIVKQR
Sbjct: 485 VKKIVKQR 492



 Score =  116 bits (280), Expect = 1e-26
 Identities = 46/80 (57%), Positives = 65/80 (81%)
 Frame = +1

Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
           P P  + +D++ +DI T K++D+IKF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH
Sbjct: 574 PDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVH 633

Query: 667 IKDSTGHTFATRLNNVFIIG 726
           +KD+TGH FATRL N+F+IG
Sbjct: 634 VKDATGHQFATRLTNIFVIG 653


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 185 EES--SEVCFDRKRSPENCE 238
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 184 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 32
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR    K
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111


>SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)
          Length = 427

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 660 NVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNLRSCNV 526
           NV  +G S    D + + Q+T +   +++PRL  D+   +R  N+
Sbjct: 292 NVGSSGSSEIQQDSSKSGQITGNTTTSRIPRLAKDKKTQMRLRNI 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,305,622
Number of Sequences: 59808
Number of extensions: 563664
Number of successful extensions: 1647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)