Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30074
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   123   1e-28
Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.4  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.4  
U29381-2|AAA68750.2|  174|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  123 bits (297), Expect = 1e-28
 Identities = 56/86 (65%), Positives = 66/86 (76%)
 Frame = +2

Query: 251 KVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 430
           +VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V 
Sbjct: 70  RVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVR 129

Query: 431 TGPKNVPYLVTHDGRTIRYPDPLIKV 508
           T  K VP L T DGRTIRYPDP +KV
Sbjct: 130 TVNKGVPVLTTTDGRTIRYPDPHVKV 155



 Score =  107 bits (256), Expect = 1e-23
 Identities = 48/80 (60%), Positives = 62/80 (77%)
 Frame = +1

Query: 487 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 666
           P P  + +D+I  +I+T KI D +KFE GNL  +TGGRN+GRVG I  RER PG+ DI+H
Sbjct: 149 PDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIH 208

Query: 667 IKDSTGHTFATRLNNVFIIG 726
           IKDS GH+FATR++NVF+IG
Sbjct: 209 IKDSAGHSFATRISNVFVIG 228



 Score =  105 bits (252), Expect = 3e-23
 Identities = 49/66 (74%), Positives = 53/66 (80%)
 Frame = +3

Query: 48  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 227
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 228 KIVKQR 245
           KI+ QR
Sbjct: 62  KILTQR 67


>Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical
           protein F32A11.3 protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 128 ETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPH-KVDGKVRTD-PTYPA 292
           + V + P+VA  +    + +E S  CF RK+  E  E  P   V   V T  PTY A
Sbjct: 145 QQVQQKPKVAPKMLHKMYDDEESGYCFARKKDVEQEEEVPEIHVAAPVTTPIPTYSA 201


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 359 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 490
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 576 LVYDHGRP*LGACGHHRVPRETSRLLRH 659
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 576 LVYDHGRP*LGACGHHRVPRETSRLLRH 659
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>U29381-2|AAA68750.2|  174|Caenorhabditis elegans Hypothetical
           protein F35D11.4 protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +2

Query: 53  P*EAFEALKRSQSMDVGQTWRCVCTETVNRSPQ----VARVLAPGDFPEESSEVCFDRKR 220
           P E  +ALK S    +G       T T+    Q    + RV   GDF E   EVC   + 
Sbjct: 83  PSEVLDALKLSLQSSMGVKGEVKKTRTLVLHGQTRIHIDRVDGLGDFME--LEVCLSPEE 140

Query: 221 SPENCETTPHKV 256
           +PE+ E   H++
Sbjct: 141 TPEHGEKIAHEI 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,176,317
Number of Sequences: 27780
Number of extensions: 407445
Number of successful extensions: 1203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)