Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30073
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 69 9e-13
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 69 9e-13
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 69 9e-13
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 69 9e-13
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 69 9e-13
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 69 9e-13
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 69 9e-13
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 69 9e-13
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 67 3e-12
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 67 3e-12
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 67 3e-12
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 29 0.91
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.6
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 27 2.1
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.7
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 6.4
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.5 bits (160), Expect = 9e-13
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = -2
Query: 217 YVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPP 38
Y+DDIL+HS E+ H+KH++ + ++L+ ++IN +KC +V F+GYHI+ +G P
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623
Query: 37 QARIQVLLDF 8
Q I +L +
Sbjct: 624 QENIDKVLQW 633
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFI 549
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 68.5 bits (160), Expect = 9e-13
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = -2
Query: 217 YVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPP 38
Y+DDIL+HS E+ H+KH++ + ++L+ ++IN +KC +V F+GYHI+ +G P
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623
Query: 37 QARIQVLLDF 8
Q I +L +
Sbjct: 624 QENIDKVLQW 633
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFI 549
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.5 bits (160), Expect = 9e-13
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = -2
Query: 217 YVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPP 38
Y+DDIL+HS E+ H+KH++ + ++L+ ++IN +KC +V F+GYHI+ +G P
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623
Query: 37 QARIQVLLDF 8
Q I +L +
Sbjct: 624 QENIDKVLQW 633
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFI 549
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.5 bits (160), Expect = 9e-13
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = -2
Query: 217 YVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPP 38
Y+DDIL+HS E+ H+KH++ + ++L+ ++IN +KC +V F+GYHI+ +G P
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623
Query: 37 QARIQVLLDF 8
Q I +L +
Sbjct: 624 QENIDKVLQW 633
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFI 549
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.5 bits (160), Expect = 9e-13
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = -2
Query: 217 YVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPP 38
Y+DDIL+HS E+ H+KH++ + ++L+ ++IN +KC +V F+GYHI+ +G P
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623
Query: 37 QARIQVLLDF 8
Q I +L +
Sbjct: 624 QENIDKVLQW 633
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFI 549
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 68.5 bits (160), Expect = 9e-13
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = -2
Query: 217 YVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPP 38
Y+DDIL+HS E+ H+KH++ + ++L+ ++IN +KC +V F+GYHI+ +G P
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623
Query: 37 QARIQVLLDF 8
Q I +L +
Sbjct: 624 QENIDKVLQW 633
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFI 549
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.5 bits (160), Expect = 9e-13
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = -2
Query: 217 YVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPP 38
Y+DDIL+HS E+ H+KH++ + ++L+ ++IN +KC +V F+GYHI+ +G P
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623
Query: 37 QARIQVLLDF 8
Q I +L +
Sbjct: 624 QENIDKVLQW 633
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFI 549
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 68.5 bits (160), Expect = 9e-13
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = -2
Query: 217 YVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPP 38
Y+DDIL+HS E+ H+KH++ + ++L+ ++IN +KC +V F+GYHI+ +G P
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623
Query: 37 QARIQVLLDF 8
Q I +L +
Sbjct: 624 QENIDKVLQW 633
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFI 549
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = -2
Query: 268 IPAIYDEVTRGLDFCFPYVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVD 89
I I EV C Y+D+IL+HS E+ H+KH++ + ++L+ ++IN +KC
Sbjct: 549 INTILGEVKESHVVC--YMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQS 606
Query: 88 EVNFLGYHINSEGTRPPQARIQVLLDF 8
+V F+GYHI+ +G P Q I +L +
Sbjct: 607 QVKFIGYHISEKGFTPCQENIDKVLQW 633
Score = 60.1 bits (139), Expect = 3e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFI 549
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = -2
Query: 268 IPAIYDEVTRGLDFCFPYVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVD 89
I I EV C Y+D+IL+HS E+ H+KH++ + ++L+ ++IN +KC
Sbjct: 549 INTILGEVKESHVVC--YMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQS 606
Query: 88 EVNFLGYHINSEGTRPPQARIQVLLDF 8
+V F+GYHI+ +G P Q I +L +
Sbjct: 607 QVKFIGYHISEKGFTPCQENIDKVLQW 633
Score = 60.1 bits (139), Expect = 3e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFI 549
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = -2
Query: 268 IPAIYDEVTRGLDFCFPYVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVD 89
I I EV C Y+D+IL+HS E+ H+KH++ + ++L+ ++IN +KC
Sbjct: 549 INTILGEVKESHVVC--YMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQS 606
Query: 88 EVNFLGYHINSEGTRPPQARIQVLLDF 8
+V F+GYHI+ +G P Q I +L +
Sbjct: 607 QVKFIGYHISEKGFTPCQENIDKVLQW 633
Score = 60.1 bits (139), Expect = 3e-10
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = -3
Query: 594 GAIWYSSTIQKCLVITTAYDN*KRRHLASCGDYRALNARTVPDRYPVRHIHDFAHNLSGS 415
G I S I C V+ K L DY+ LN P+ YP+ I + GS
Sbjct: 439 GIIRESKAINACPVMFVPK---KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGS 495
Query: 414 KVFSTIDLVKAYHQIPIAEEDVPKTAIVTPFGLFEFPFMTFGLRNAGQTFQRFM 253
+F+ +DL AYH I + + D K A P G+FE+ M +G+ A FQ F+
Sbjct: 496 TIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFI 549
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 647 RRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKK 525
R+ + Q +AAKK VQS TAR + S + L MT+ +
Sbjct: 982 RQASQQLYMAAKKSELGFVQSQTARENLSNYYQALQMTVSE 1022
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -2
Query: 199 VHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPPQA 32
V +AD NL L+ L L ERL N + L ++LGYH N R P +
Sbjct: 118 VSTADNNLVLQELENLRERL-------NQVELQLSERPSSYLGYHNNLSPYRSPNS 166
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 483 ARTVPDRYPVRH-IHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKT 340
A +P R +H IHD ++ SKVF + + P E +V KT
Sbjct: 827 AEDIPARDRKKHKIHDKGKKVNSSKVFEKMGIASMEKYKPPQESNVTKT 875
>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 238 GLDFCFPYVDDILVHSADENLHLKHL 161
G DFC+ Y D + H DEN + +L
Sbjct: 200 GNDFCYIYKDSEIGHMHDENYMVSNL 225
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 653 RPRRLAPQKLVAAKKEFEDMVQSGTARPSKS 561
R ++L +K A KKE ED++Q+ SKS
Sbjct: 144 RLQQLIEKKRNALKKEQEDLIQNSATSHSKS 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,432
Number of Sequences: 5004
Number of extensions: 68362
Number of successful extensions: 234
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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