Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30073
         (734 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ821442-1|ABG91576.1|  573|Homo sapiens reverse transcriptase p...    35   0.26 
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro...    35   0.26 
DQ058014-2|AAY87453.1|  135|Homo sapiens pol precursor protein.        34   0.61 
AF298588-1|AAK11554.1|  956|Homo sapiens polymerase protein.           34   0.61 
AF298587-1|AAK11553.1|  956|Homo sapiens polymerase protein.           34   0.61 
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro...    34   0.61 
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro...    34   0.61 
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein...    34   0.61 
AF080234-1|AAC63294.1|  572|Homo sapiens polymerase protein.           34   0.61 
AF080233-1|AAC63293.1|  572|Homo sapiens polymerase protein.           34   0.61 
AF080232-1|AAC63292.1|  572|Homo sapiens polymerase protein.           34   0.61 
AF080231-1|AAC63291.1|  596|Homo sapiens polymerase protein.           34   0.61 
AF080229-1|AAC63290.1|  597|Homo sapiens polymerase protein.           34   0.61 
AF074086-7|AAD21097.1|  956|Homo sapiens polymerase protein.           34   0.61 
AF074086-3|AAF88167.1|  956|Homo sapiens polymerase protein.           34   0.61 
AF480924-3|AAM81188.1|  863|Homo sapiens pol protein protein.          33   0.80 
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro...    32   2.5  

>DQ821442-1|ABG91576.1|  573|Homo sapiens reverse transcriptase
           protein.
          Length = 573

 Score = 35.1 bits (77), Expect = 0.26
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+     +L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 33  PVWVNQWQLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 84


>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
          Length = 1177

 Score = 35.1 bits (77), Expect = 0.26
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 665  PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
            P+     +L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 956  PVWVNQWQLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 1007


>DQ058014-2|AAY87453.1|  135|Homo sapiens pol precursor protein.
          Length = 135

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 22  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 73


>AF298588-1|AAK11554.1|  956|Homo sapiens polymerase protein.
          Length = 956

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 33  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 84


>AF298587-1|AAK11553.1|  956|Homo sapiens polymerase protein.
          Length = 956

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 33  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 84


>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein protein.
          Length = 1117

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665  PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
            P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 956  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 1007


>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
          Length = 1879

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665  PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
            P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 956  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 1007


>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
            protein.
          Length = 2294

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665  PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
            P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 956  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 1007


>AF080234-1|AAC63294.1|  572|Homo sapiens polymerase protein.
          Length = 572

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 16  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 67


>AF080233-1|AAC63293.1|  572|Homo sapiens polymerase protein.
          Length = 572

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 16  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 67


>AF080232-1|AAC63292.1|  572|Homo sapiens polymerase protein.
          Length = 572

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 16  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 67


>AF080231-1|AAC63291.1|  596|Homo sapiens polymerase protein.
          Length = 596

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 32  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 83


>AF080229-1|AAC63290.1|  597|Homo sapiens polymerase protein.
          Length = 597

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 32  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 83


>AF074086-7|AAD21097.1|  956|Homo sapiens polymerase protein.
          Length = 956

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 33  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 84


>AF074086-3|AAF88167.1|  956|Homo sapiens polymerase protein.
          Length = 956

 Score = 33.9 bits (74), Expect = 0.61
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 665 PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTWR 510
           P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   WR
Sbjct: 33  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWR 84


>AF480924-3|AAM81188.1|  863|Homo sapiens pol protein protein.
          Length = 863

 Score = 33.5 bits (73), Expect = 0.80
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = -2

Query: 217 YVDDILVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGVDEVNFLGYHINSEGTRPP 38
           Y+DD+L+ +  E+  ++  + L   L++ G+ + P +   G + V +LG  + SE   P 
Sbjct: 187 YMDDLLITAESESHLMEAYKLLLLYLEKVGLQVAPERIQKG-EVVQYLGLKVTSEKVTPL 245

Query: 37  QARIQV 20
           +  I +
Sbjct: 246 EFEIAI 251


>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
          Length = 1755

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 665  PIXCRPRRLAPQKLVAAKKEFEDMVQSGTARPSKSAWSSPLHMTIKKDDTW 513
            P+      L  QKL A      + ++ G   PS S W+SP+ +  KK   W
Sbjct: 956  PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKW 1006


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,082,353
Number of Sequences: 237096
Number of extensions: 2597137
Number of successful extensions: 4715
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4715
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)