Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30073
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    29   0.045
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.14 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 29.1 bits (62), Expect = 0.045
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = -3

Query: 516 LASCGDYRALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDV--PK 343
           L + G Y   N     D   V  ++     LSG  +FS +  +    Q P+A+  V  P 
Sbjct: 298 LVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPG 357

Query: 342 TA-IVTPFGLFEFP 304
            A +V P  + E P
Sbjct: 358 LAFLVYPSAVLELP 371


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = -3

Query: 516 LASCGDYRALNARTVPDRYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAE--EDVPK 343
           L + G Y   N     D   V  ++     LSG  +FS +  +    Q P+A+     P 
Sbjct: 351 LVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPG 410

Query: 342 TA-IVTPFGLFEFP 304
            A +V P  + E P
Sbjct: 411 LAFLVYPSAVLELP 424


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 250  HHKSLECLSRVSKPKSHEWEFEEAKR 327
            HH+ L C+ R S P     E   A R
Sbjct: 1100 HHRDLPCVLRASTPAPVVLEAVHASR 1125


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 211 QRRENRNQDPV*PHHKSLECLSRVSKPKSHEWEFEEAKR 327
           Q+++  +QD    H  + E     S  K H+ +F E  R
Sbjct: 101 QQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQFAELGR 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,220
Number of Sequences: 438
Number of extensions: 4338
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)