Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30073
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02840.1 68415.m00231 expressed protein                             33   0.20 
At1g54920.2 68414.m06269 expressed protein                             31   0.60 
At1g52640.1 68414.m05944 pentatricopeptide (PPR) repeat-containi...    28   5.6  
At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapien...    28   7.4  
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t...    28   7.4  
At1g25550.1 68414.m03172 myb family transcription factor contain...    28   7.4  
At3g04980.1 68416.m00541 DNAJ heat shock N-terminal domain-conta...    27   9.8  

>At2g02840.1 68415.m00231 expressed protein
          Length = 155

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -2

Query: 427 PLWFKSFQHHRFSKSLSPDTDR*GGRAEDSNCYTVWPLRIPIHDFWASKRGTDIPAIYDE 248
           P+ ++S Q       +SP        + DS    +W    PI  F A  R   IP++ D 
Sbjct: 71  PISYESDQEDYEDPPISPYISEAVVHSPDSTFALLWEGTSPILHFAADMRADAIPSVGDG 130

Query: 247 VTRG--LDFCFPYVDD 206
            T G  + +CF Y +D
Sbjct: 131 TTSGIHIPYCFIYGED 146


>At1g54920.2 68414.m06269 expressed protein
          Length = 890

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 604 SRIWCNLVQLDHPKVPGHH 548
           + IW NL+  D P +PGHH
Sbjct: 867 ANIWANLISRDPPNLPGHH 885


>At1g52640.1 68414.m05944 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 523

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 220 PYVDDI--LVHSADENLHLKHLRTLFERLQEYGVVINPSKCTLGV 92
           P VDD+  L+HS  +  H+ H +  F + + +G+V  PS  T  +
Sbjct: 171 PCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIV--PSAKTYSI 213


>At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapiens,
           EMBL:HSORFKG1O
          Length = 963

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 340 SNCYTVWPLRIPIHD 296
           SNC ++WP  +P+HD
Sbjct: 149 SNCGSLWPAFVPVHD 163


>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
           enhancer of zeste-like protein 1(EZA1) (GI:4185507)
           [Arabidopsis thaliana]; similar to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 856

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 465 RYPVRHIHDFAHNLSGSKVFSTIDLVKAYHQIPIAEEDVPKT 340
           R P+  ++ F+H +       T D++ A  ++PIAE   P T
Sbjct: 93  RMPLCKLNGFSHGVGDRDYVPTKDVISASVKLPIAERIPPYT 134


>At1g25550.1 68414.m03172 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 623 VAAKKEFEDMVQSGTARPSKSAWSSPLH 540
           V   KEFE+  QS + R  +  WS  LH
Sbjct: 192 VGGGKEFEEQKQSHSNRKQRRCWSPELH 219


>At3g04980.1 68416.m00541 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 1165

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 662 IXCRPR--RLAPQKLVAAKKEFEDMVQSGTARPSKS 561
           + C+ R   + P    A +KEF+D V S T+R + S
Sbjct: 179 VACKMRCDGVPPSSSTAGRKEFQDQVMSNTSRQNAS 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,027,143
Number of Sequences: 28952
Number of extensions: 371173
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)