Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30072
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   159   4e-40
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    87   3e-18
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    82   8e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    77   2e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    48   1e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    47   3e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    37   0.003
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   4.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.5  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    25   9.6  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    25   9.6  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  159 bits (385), Expect = 4e-40
 Identities = 71/82 (86%), Positives = 73/82 (89%)
 Frame = +2

Query: 257 MGQKDSYVGDEAXSXRGILTLKYPIEHGIVTNWDDMXKIWHHTXYNELRVAPEXHPVLLT 436
           MGQKDSYVGDEA S RGILTLKYPIEHGIV NWDDM KIWHHT YNELRVAPE HP LLT
Sbjct: 47  MGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLT 106

Query: 437 EAPLNPKANXEKMTQIMFXTFN 502
           EAPLNPK+N EKMTQI+F TFN
Sbjct: 107 EAPLNPKSNREKMTQIIFETFN 128



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 39/44 (88%), Positives = 43/44 (97%)
 Frame = +3

Query: 123 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 254
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MV
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMV 45



 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 43/47 (91%), Positives = 45/47 (95%)
 Frame = +1

Query: 514 YVAIQAVLSLYASGRTTGIVLXSGDGVSHTVPIYEGYALRHAILRLD 654
           YVAIQAVLSLYASGRTTGIVL SGDGV+HTVPIYEGYAL HAI+RLD
Sbjct: 133 YVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLD 179


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 35/85 (41%), Positives = 58/85 (68%)
 Frame = +2

Query: 245 RDGRMGQKDSYVGDEAXSXRGILTLKYPIEHGIVTNWDDMXKIWHHTXYNELRVAPEXHP 424
           + G +  KD  VGDEA + R +L +KYP+E+GI+ ++++M ++W +T + +L++ P    
Sbjct: 43  KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102

Query: 425 VLLTEAPLNPKANXEKMTQIMFXTF 499
           +LLTE P+NP AN EKM + MF  +
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERY 127



 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = +1

Query: 511 MYVAIQAVLSLYASGRTTGIVLXSGDGVSHTVPIYEGYALRHAILRLD 654
           +YVAIQAVLSLYA G ++G+V+ SGDGV+H VP+YE   L H + RLD
Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLD 179



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 129 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 233
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 81.8 bits (193), Expect = 8e-17
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
 Frame = +2

Query: 263 QKDSYVGDEAXSXRGILTLKYPIEHGIVTNWDDMXKIWHHTXYN-ELRVAPEXHPVLLTE 439
           QKD +VG EA + RG+L ++ PIE GI+ NW DM +IW +   + +L   PE HP+LLTE
Sbjct: 53  QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112

Query: 440 APLNPKANXEKMTQIMFXTFN 502
            PL    N EK+ +  + T N
Sbjct: 113 PPLANIRNKEKIAEYFYETLN 133



 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 25/41 (60%), Positives = 35/41 (85%)
 Frame = +1

Query: 520 AIQAVLSLYASGRTTGIVLXSGDGVSHTVPIYEGYALRHAI 642
           ++Q VL+LYAS RTTGIVL  GDG++H+VPIY+G+++  AI
Sbjct: 140 SLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180



 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +3

Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 251
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +2

Query: 269 DSYVGDEAXSXRGI-LTLKYPIEHGIVTNWDDMXKIWHHTXYNELRVAPEXHPVLLTEAP 445
           D ++G++A        +L YPI HG + NWD M + W  + +  LR  PE H  LLTE P
Sbjct: 73  DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132

Query: 446 LNPKANXEKMTQIMFXTFN 502
           LNP  N E   +IMF +FN
Sbjct: 133 LNPPENRENTAEIMFESFN 151



 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 8/54 (14%)
 Frame = +1

Query: 505 APMYVAIQAVLSLYASGRT--------TGIVLXSGDGVSHTVPIYEGYALRHAI 642
           A +Y+A+QAVL+L AS  +        TG V+ SGDGV+H +P+ EGY +  +I
Sbjct: 153 AGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSI 206



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +3

Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 224
           +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = +2

Query: 245 RDGRMGQKDSYVGDEAXSXRGILTL-KYPIEHGIVTNWDDMXKIWHHTXYNELRVAPEXH 421
           RD ++ +  + VG++     G  ++ + P E  +++NWD M ++  +T + +L +    H
Sbjct: 58  RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYT-FLKLGIDRMEH 116

Query: 422 PVLLTEAPLNPKANXEKMTQIMFXTFN 502
           P+ +TE   NP      MT+++F  +N
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYN 143



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 236
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 523 IQAVLSLYASGR--TTGIVLXSGDGVSHTVPIYEG 621
           I  + S Y + +  ++GIVL  G+  SH +P+  G
Sbjct: 151 IDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +2

Query: 311 LTLKYPIEHGIVTNWDDMXKIWHHTXYNELRVAPEXHPVLLTEAPLNPKANXEKMTQIMF 490
           + +K  I +G V NWD    +W +    +L+  P  HP+L+TE   NP  N  K  + MF
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 126 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 227
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 514 YVAIQAVLSLYASGRTTGIVLXSGDGVSHTVPIYEGYALR 633
           Y+A Q   + +ASG+ T  ++  G   S    IY+G+ L+
Sbjct: 131 YLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQ 170


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 126 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 227
           EE+ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +2

Query: 266 KDSYVGDEAXSXRGI--LTLKYPIEHGIVTNWDDMXKIWHHTXYNELRVAPEXHPVLLTE 439
           ++ YV DE      I  + +K    +GI+ +W+     W      +L+V P  + +++TE
Sbjct: 49  RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108

Query: 440 APLNPKANXEKMTQIMF 490
              NP++  +++ +  F
Sbjct: 109 PSWNPQSVRQQIMEAAF 125


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 171  KAGFAGDDAP-RAVFPSIVGRPRHQGVMVVWD 263
            KA F+G     R+ +   VG+P H G++  WD
Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = +3

Query: 498 STXPHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRR 620
           ST P   RH  R    R RS HR+  G  RR  P+R HL R
Sbjct: 128 STSP-ANRH-RRKEKERTRSNHRH--GSHRRHEPYRTHLSR 164


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 168 TYRSHCLLPTRQLLRRTS*ISEI 100
           TYR H  +PT  LL  T  +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 609 GHGVGDTVAGXQHDTGGTTGR 547
           G G GDTV       GG  GR
Sbjct: 139 GRGAGDTVVSRSSGAGGARGR 159


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 510 HVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPR 638
           +VR HP  A+ +R    H Y +G    C+    ++ R+   P+
Sbjct: 248 YVRLHPGEAVFLRALDPHAYVSGNIIECMAASDNVIRLGFTPK 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,976
Number of Sequences: 5004
Number of extensions: 51629
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)