Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30071
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   2.0  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   3.5  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    24   8.1  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = -2

Query: 298 VFINICV-----NXRYIDLAHFSGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAH 134
           +F+NICV     N   I+   F G  + I  A  F  CSY+     S L   +   PP  
Sbjct: 181 IFVNICVSAKLVNTLIIEQIKFFGVNIGIGRAILFNLCSYLSSFGWSGLALPILVYPPTL 240

Query: 133 XCP 125
             P
Sbjct: 241 IWP 243


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 284 LCKXQVYRSGTLFGSEAHNTDCFVFFGMFIH 192
           L + QVY++  LFGS   +   F   G+ +H
Sbjct: 9   LSRSQVYQASLLFGSRVISALAFTNTGLVLH 39


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 226 PTASYFLECSYIRGPPESPLQESLPASPP 140
           PTAS    C  I G P SP   +  A  P
Sbjct: 217 PTASSVRSCQSIYGSPLSPPNSAFQAEMP 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,211
Number of Sequences: 5004
Number of extensions: 26190
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)