Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30071
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    29   1.1  
04_04_1460 + 33764106-33764303,33764675-33766201                       29   1.5  
12_01_0901 - 8736190-8736240,8736426-8736821                           28   2.6  
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944...    28   3.4  
01_01_0545 - 4002659-4003307,4003415-4003887                           28   3.4  
01_07_0205 - 41978437-41980599,41980805-41981215                       27   5.9  
10_08_0885 - 21290394-21291347                                         27   7.8  
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    27   7.8  

>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 184 PPESPLQESLPASPPAHXCPFHNVILWPLP 95
           PP +P Q+  P  PP+H  P  +V   P P
Sbjct: 421 PPPAPSQQPQPPPPPSHPTPITSVAPAPPP 450


>04_04_1460 + 33764106-33764303,33764675-33766201
          Length = 574

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -2

Query: 214 YFLECSYI---RGPPESPLQESLPASPPA 137
           YFL CSY    +G PE   ++S PA+P A
Sbjct: 541 YFLVCSYFYRYKGEPEVAAEDSPPATPEA 569


>12_01_0901 - 8736190-8736240,8736426-8736821
          Length = 148

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 184 PPESPLQESLPASPPAHXCPFHNVILWP 101
           PP S  Q+ LP  P A    +H+ +LWP
Sbjct: 88  PPPSTRQQQLPPRP-ARPLGYHHGVLWP 114


>01_05_0687 +
           24288648-24292746,24293737-24293844,24294333-24294442,
           24295208-24295282
          Length = 1463

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 247 SGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPA 137
           S P++  P  S   + S++  PP +PL ES+P+ P A
Sbjct: 768 SSPEMA-PAGSENCKVSWLPLPPPTPLGESMPSLPVA 803


>01_01_0545 - 4002659-4003307,4003415-4003887
          Length = 373

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 196 YIRGPPESPLQESLPASPPAHXCPFHNVILWP 101
           Y  GPP       LP + PA   P +  + WP
Sbjct: 300 YFLGPPPDAEVAPLPEAVPAGRSPAYRAVTWP 331


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 313 LYPWQVFINICVNXRYIDLAHFSGPKLTIPTASYFLE 203
           LY W V  + C + R +DL  F   ++ +P  S FLE
Sbjct: 515 LYEWNVDFSKCKSLRVLDLHGFHSSQVMLP--SRFLE 549


>10_08_0885 - 21290394-21291347
          Length = 317

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 184 PPESPLQESLPASPPAHXCPF 122
           PP  P   S  A+P  H CPF
Sbjct: 228 PPPRPAPASSAAAPAIHECPF 248


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = -2

Query: 268 YIDLAHFSGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAHXCP 125
           Y   A +  P    PT  Y +  +    PP  P     PASPP    P
Sbjct: 28  YDIFATYGSPIPPSPTTCYPVSSAAPTAPPPKPSPTPPPASPPPAPTP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,544,522
Number of Sequences: 37544
Number of extensions: 185352
Number of successful extensions: 658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)