Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30069
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 39 5e-04
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 39 5e-04
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 39 5e-04
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 39 5e-04
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 39 5e-04
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 39 5e-04
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 39 5e-04
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 39 5e-04
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 39 5e-04
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 39 5e-04
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 39 5e-04
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 27 2.4
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.1
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 5.5
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.5
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 25 7.2
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 9.5
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 9.5
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 KIMGMVNYLSPFIPHXXXXXXXXXXXXXXXXDWILLEKQAEFYK-IKLFITDSPVLG*YD 425
+ +G VNYL FIP W Q + + IK + PVL +D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703
Query: 426 TNKEITLSFDASKDAMGAVI 485
+K+I L DAS A+GAV+
Sbjct: 704 FSKKILLETDASDVAVGAVL 723
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Frame = +2
Query: 32 LEKLYKNIMRHFKKY*IGLVN*ILNLTKKNLRYVVQKLN---------T*EISSVKKESK 184
LE K+ + ++Y GLV ILN+ + N++ + +N + + VK E +
Sbjct: 395 LENRSKSKLAPVRRYLSGLVGDILNICEYNIKLIDFDINHLQQRLTDLSPKFRKVKHEQQ 454
Query: 185 LTLQKSKQFVKCQFRLVS 238
T QK++ V+ + +S
Sbjct: 455 FTYQKNESLVEATVQSIS 472
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 345 WILLEKQAEFYKIKLFITDSPVLG*YDTNKEITLS 449
W L KQ+ Y+I+LF S L Y+ NK I ++
Sbjct: 283 WYSLPKQSILYEIRLFAMSS--LWHYEKNKSIKIA 315
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 420 YDTNKEITLSFDASKDAMGAVILHDNQPIAM 512
Y+T +++T F+A D + A+++H QP +
Sbjct: 85 YNTGEKVT-QFEAHPDYIRALVVHPTQPFLL 114
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -1
Query: 234 TSRNWHFTNCFDF*RVNFDSFLTEDIS*VFNFCTTYRRFFFVKFNI*FTSPI*YFLKCLI 55
T++NW D R++F F+T + F T FF F + I Y + I
Sbjct: 253 TTKNWGLHAAHDEYRLDFKEFVTLHLVRPFAMLATPIVFFIAMFAS-YVYGILYLVLTTI 311
Query: 54 MFLYSFSKN 28
+ + +KN
Sbjct: 312 PYTFGMTKN 320
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 58 EALQKVLNRARELNIKFNKEKSSICCTEVKYLGDIFSQEGVKV 186
E L++ NRA L + S++ KY +I + GVK+
Sbjct: 234 ERLKESQNRAASLTTFNECDMSAVVALRKKYKDEILKETGVKI 276
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 393 ITDSPVLG*YDTNKEITLSFDASKDAMGAVILH 491
+ D+PV+ YD NK T F+ K + +H
Sbjct: 257 VDDTPVIPDYDKNKAWTYRFERMKTPSLFITIH 289
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 316 LDHFCQKIVIGFY*KNRLNFIKLSCL*QIVQCWDNMI 426
L HF Q V+G ++ + + LS L ++V C ++I
Sbjct: 1101 LTHFLQVSVMGLEDEHYIKLVSLSILEKLVDCSPSII 1137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,174
Number of Sequences: 5004
Number of extensions: 48288
Number of successful extensions: 130
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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