Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30069
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.          36   0.13 
BC005883-1|AAH05883.2|  537|Homo sapiens FLJ20323 protein protein.     30   6.3  
AC004982-1|AAC31788.1|  379|Homo sapiens WUGSC:H_DJ1159O04.1 pro...    30   6.3  
AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with holl...    30   8.3  

>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
          Length = 1183

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +1

Query: 13  MDDFLIFGKTI*EHNEALQKVLNRARELNIKFNKEKSSICCTEVKYLGDIFSQEGVKVDP 192
           +DD L+   T     +    +L    +   K +K+K+ IC  +V+YLG    Q    +  
Sbjct: 332 VDDLLLGHPTAVGCAKGTDALLRHLEDCGYKVSKKKAQICRPQVRYLGFTIRQGERSLGS 391

Query: 193 SKVKAICEMPIPTCVNELQR 252
            + + IC +P P    ++++
Sbjct: 392 ERKQVICTLPEPKSRKQVRK 411


>BC005883-1|AAH05883.2|  537|Homo sapiens FLJ20323 protein protein.
          Length = 537

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +1

Query: 94  LNIKFNKEKSSICCTEVKYLGDIFSQEGVKVDPSKVKAI----CEMPIPTC 234
           ++  F  +  S  C+ V + G  FSQ GV   P+K K      C  P+P C
Sbjct: 397 VSCNFCGKSISYSCSAVPHQGRGFSQYGVSGSPTKSKVTSCPGCRKPLPRC 447


>AC004982-1|AAC31788.1|  379|Homo sapiens WUGSC:H_DJ1159O04.1
           protein.
          Length = 379

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +1

Query: 94  LNIKFNKEKSSICCTEVKYLGDIFSQEGVKVDPSKVKAI----CEMPIPTC 234
           ++  F  +  S  C+ V + G  FSQ GV   P+K K      C  P+P C
Sbjct: 270 VSCNFCGKSISYSCSAVPHQGRGFSQYGVSGSPTKSKVTSCPGCRKPLPRC 320


>AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with
           holliday junction DNA helicase RUVB like protein.
          Length = 1184

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 169 QEGVKVDPSKVKAICEM---PIPTCVNELQRLW 258
           QEG++ DP  + A+CE     I  C+N LQ L+
Sbjct: 718 QEGMRADPGVLAALCEKTDNDIRACINTLQFLY 750


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,051,813
Number of Sequences: 237096
Number of extensions: 1481128
Number of successful extensions: 2590
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2590
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)