Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30069
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    48   4e-06
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    48   4e-06
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    48   4e-06
U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l...    29   2.9  
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p...    29   2.9  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = +1

Query: 7    VMMDDFLIFGKTI*EHNEALQKVLNRARELNIKFNKEKSSICCTEVKYLGDIFSQEGVKV 186
            V +DD LI  K + +H + +++ L R R+  +K    K  I   EV+YLG   + +GV+ 
Sbjct: 1179 VYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVET 1238

Query: 187  DPSKVKAICEMPIPTCVNELQ 249
               K   + +   PT V ELQ
Sbjct: 1239 QEVKTDKMKQFSRPTNVKELQ 1259



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 506  SYASASLTKSQQNYAQIEKXLLSXVXGCIKFHQCVYGRQINVETDHKPL 652
            ++AS +L+ ++  Y   +   L+ +    +F   +YG  I V TDHKPL
Sbjct: 1358 AFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPL 1406


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = +1

Query: 7    VMMDDFLIFGKTI*EHNEALQKVLNRARELNIKFNKEKSSICCTEVKYLGDIFSQEGVKV 186
            V +DD LI  K + +H + +++ L R R+  +K    K  I   EV+YLG   + +GV+ 
Sbjct: 1082 VYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVET 1141

Query: 187  DPSKVKAICEMPIPTCVNELQ 249
               K   + +   PT V ELQ
Sbjct: 1142 QEVKTDKMKQFSRPTNVKELQ 1162



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 506  SYASASLTKSQQNYAQIEKXLLSXVXGCIKFHQCVYGRQINVETDHKPL 652
            ++AS +L+ ++  Y   +   L+ +    +F   +YG  I V TDHKPL
Sbjct: 1261 AFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPL 1309


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = +1

Query: 7    VMMDDFLIFGKTI*EHNEALQKVLNRARELNIKFNKEKSSICCTEVKYLGDIFSQEGVKV 186
            V +DD LI  K + +H + +++ L R R+  +K    K  I   EV+YLG   + +GV+ 
Sbjct: 1093 VYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVET 1152

Query: 187  DPSKVKAICEMPIPTCVNELQ 249
               K   + +   PT V ELQ
Sbjct: 1153 QEVKTDKMKQFSRPTNVKELQ 1173



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 506  SYASASLTKSQQNYAQIEKXLLSXVXGCIKFHQCVYGRQINVETDHKPL 652
            ++AS +L+ ++  Y   +   L+ +    +F   +YG  I V TDHKPL
Sbjct: 1272 AFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPL 1320


>U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical
           protein T16A1.8 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 160 IFSQEGVKVDPSKVKAICEMPIPTCVNEL 246
           I S++G++ DP K+KA+ + P P  V ++
Sbjct: 322 IVSKDGIQTDPEKIKAVSKFPQPKNVMDV 350


>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
           lineage protein 49 protein.
          Length = 1042

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 514 LSLIN*KSTKLCTNRKRXLIYXXWMYKIPPVCIWE 618
           +S++N K TKL        IY  W+ ++  +CIW+
Sbjct: 145 MSIMNAKRTKLGLEIFSVAIYEHWVDRLEKMCIWK 179


>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
           protein LIN-49 protein.
          Length = 1042

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 514 LSLIN*KSTKLCTNRKRXLIYXXWMYKIPPVCIWE 618
           +S++N K TKL        IY  W+ ++  +CIW+
Sbjct: 145 MSIMNAKRTKLGLEIFSVAIYEHWVDRLEKMCIWK 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,803
Number of Sequences: 27780
Number of extensions: 261349
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)