Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30068
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 166 3e-42
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 105 5e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 104 1e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 91 2e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 3e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 3e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 57 2e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 53 4e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 41 2e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.078
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 31 0.14
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 31 0.24
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.41
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.55
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 28 1.3
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 2.2
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.9
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 27 2.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.1
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 8.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 166 bits (403), Expect = 3e-42
Identities = 77/84 (91%), Positives = 81/84 (96%)
Frame = +2
Query: 2 APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 181
APEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 97 APEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSG 156
Query: 182 DGVSHTVPIYEGYALPHAILRLDL 253
DGV+HTVPIYEGYALPHAI+RLDL
Sbjct: 157 DGVTHTVPIYEGYALPHAIMRLDL 180
Score = 164 bits (399), Expect = 1e-41
Identities = 78/87 (89%), Positives = 83/87 (95%)
Frame = +1
Query: 250 LSGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS 429
L+GRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKS
Sbjct: 180 LAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKS 239
Query: 430 YELPDGQVITIGNERFRCPEALFQPSS 510
YELPDGQVITIGNERFR PEALFQPS+
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSA 266
Score = 120 bits (289), Expect = 2e-28
Identities = 55/74 (74%), Positives = 60/74 (81%)
Frame = +3
Query: 483 PRGSLPTLVLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 662
P LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI
Sbjct: 258 PEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEI 317
Query: 663 TALAPSTMKIKIIA 704
ALAPS+MK+KI+A
Sbjct: 318 QALAPSSMKVKIVA 331
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 707 PERKYSVWIGGSIFASLS 760
PERKYSVWIGGSI ASLS
Sbjct: 333 PERKYSVWIGGSILASLS 350
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 105 bits (253), Expect = 5e-24
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +2
Query: 5 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 184
P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 185 GVSHTVPIYEGYALPHAILRLDL 253
GV+H VP+YE L H + RLD+
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDV 180
Score = 99.5 bits (237), Expect = 5e-22
Identities = 42/85 (49%), Positives = 62/85 (72%)
Frame = +1
Query: 250 LSGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS 429
++GRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + ++ L ++
Sbjct: 180 VAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRN 239
Query: 430 YELPDGQVITIGNERFRCPEALFQP 504
Y LPDG+VI +G+ER+ CPE LFQP
Sbjct: 240 YTLPDGRVIKVGSERYECPECLFQP 264
Score = 55.6 bits (128), Expect = 7e-09
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +3
Query: 507 VLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 671
++G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 266 LVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQL 320
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 104 bits (250), Expect = 1e-23
Identities = 45/78 (57%), Positives = 62/78 (79%)
Frame = +2
Query: 5 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 184
PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GD
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162
Query: 185 GVSHTVPIYEGYALPHAI 238
G++H+VPIY+G+++P AI
Sbjct: 163 GLTHSVPIYDGFSIPSAI 180
Score = 89.8 bits (213), Expect = 4e-19
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +1
Query: 250 LSGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS 429
+ GRD+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +
Sbjct: 185 IGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHT 244
Query: 430 YELPDGQVITIGNERFRCPEALFQP 504
Y+LPD Q IT+G E F PE LF P
Sbjct: 245 YQLPDNQTITLGTECFSAPEVLFNP 269
Score = 59.7 bits (138), Expect = 4e-10
Identities = 26/66 (39%), Positives = 42/66 (63%)
Frame = +3
Query: 507 VLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTM 686
++G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++
Sbjct: 271 MMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKN 330
Query: 687 KIKIIA 704
++KI A
Sbjct: 331 QVKIYA 336
Score = 33.9 bits (74), Expect = 0.025
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 698 HCSPERKYSVWIGGSIFASLS 760
+ SPER ++ W+GGSI ASLS
Sbjct: 335 YASPERMHNAWLGGSILASLS 355
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 90.6 bits (215), Expect = 2e-19
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 8/91 (8%)
Frame = +2
Query: 5 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------T 160
PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + T
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLT 180
Query: 161 GIVLDSGDGVSHTVPIYEGYALPHAILRLDL 253
G V+DSGDGV+H +P+ EGY + +I + L
Sbjct: 181 GTVVDSGDGVTHIIPVAEGYVIGSSIKTMPL 211
Score = 42.3 bits (95), Expect = 7e-05
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 537 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 662
E N + +D+RK LY N VLSGG+T++ +R+Q+++
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDL 350
Score = 39.9 bits (89), Expect = 4e-04
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +1
Query: 250 LSGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSS-- 417
L+GRD+T ++ +L +R S TAER IKE+ CYV D +E +
Sbjct: 211 LAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPDRY 265
Query: 418 LEKSYELPDGQVITI--GNERFRCPEALFQP 504
L+ + E G TI G ERF PE F P
Sbjct: 266 LKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.7 bits (148), Expect = 3e-11
Identities = 31/74 (41%), Positives = 43/74 (58%)
Frame = +2
Query: 5 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 184
P EHP+L+TE NP NR K + MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 96 PLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGA 155
Query: 185 GVSHTVPIYEGYAL 226
S IY+G+ L
Sbjct: 156 ERSSVSAIYDGFVL 169
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +3
Query: 528 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA 704
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHA 383
Score = 34.7 bits (76), Expect = 0.015
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 400 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSS 510
++ ++ E +E PDG + G ER++ PE LF P S
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVPGS 290
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 710 ERKYSVWIGGSIFASL 757
ER Y+ W+GGSI +SL
Sbjct: 389 ERSYASWLGGSILSSL 404
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.1 bits (139), Expect = 3e-10
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +2
Query: 11 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGD 184
EHP+ +TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 185 GVSHTVPIYEG 217
SH +P+ G
Sbjct: 175 AASHVIPVLNG 185
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/90 (23%), Positives = 46/90 (51%)
Frame = +3
Query: 456 HYRKRKIPLPRGSLPTLVLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 635
H +I +P ++G++ GI E + + + ++ ++ L +N +++GG PG
Sbjct: 590 HLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPG 649
Query: 636 IADRMQKEITALAPSTMKIKIIALQRGSTP 725
+ R+++E+T++ P I + R S P
Sbjct: 650 METRIKRELTSIMPVGSSINVF---RASNP 676
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/70 (35%), Positives = 43/70 (61%)
Frame = +3
Query: 528 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAL 707
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA + +I +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGS-RINVHTA 381
Query: 708 QRGSTPYGSV 737
+ S +V
Sbjct: 382 ETASATSNAV 391
Score = 56.0 bits (129), Expect = 6e-09
Identities = 23/83 (27%), Positives = 47/83 (56%)
Frame = +2
Query: 5 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 184
P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGS 158
Query: 185 GVSHTVPIYEGYALPHAILRLDL 253
+ P+ +G + I + L
Sbjct: 159 DNASVTPVVDGLIIRKGIFKQSL 181
Score = 42.7 bits (96), Expect = 5e-05
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = +1
Query: 307 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 486
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 487 EALFQPSSWVWKLAASTRP 543
E LF PS + A +T P
Sbjct: 300 EILFNPSFSASRSAETTPP 318
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 722 SVWIGGSIFASLSN 763
+VW GGSI ASL N
Sbjct: 390 AVWFGGSILASLDN 403
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 53.2 bits (122), Expect = 4e-08
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 20/106 (18%)
Frame = +1
Query: 250 LSGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS--SSLE 423
+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV+ +F+++M S LE
Sbjct: 188 VGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLE 245
Query: 424 KSYELPD------------------GQVITIGNERFRCPEALFQPS 507
Y LPD QV+ + NERF PE LF PS
Sbjct: 246 ICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPS 291
Score = 39.1 bits (87), Expect = 7e-04
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 528 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI 698
GI E S+ +I+ L N V GG +PG R+ E+ +LAP+ ++K+
Sbjct: 299 GIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKV 355
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +2
Query: 14 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 193
+PV L +RE TQ FE P +A + ++ LYA G G+V+D G +
Sbjct: 147 YPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKT 206
Query: 194 HTVPIYEGYALPHAILRLDL 253
PI +G + A +L L
Sbjct: 207 DITPILDGQIIFTATQQLPL 226
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.078
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 105 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 239
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +3
Query: 102 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 239
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 102 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 239
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 102 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 239
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 395 PPLHPAAP-SRSLTNFPTVRSSLSETKDSVAQRLSSNPRL-GYGSLRHPRDHI*LHHEVR 568
P P+ P S + + T SSLS + SSN L GY +L HPR+ I + +
Sbjct: 432 PSSTPSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNSLYGYSTLLHPRNPICVRQRIG 491
Query: 569 RG 574
RG
Sbjct: 492 RG 493
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 578 DVHVALHDGVICG--LVDAASFHTQDEGWKRASGQRNLSFPIVM 453
D++VA CG + D A H DE WK + ++FPIV+
Sbjct: 190 DINVATSCRTFCGYYISDDAIKHIADEYWKITAAMELVNFPIVL 233
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.41
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 81 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 239
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 0.96
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 81 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 239
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 93 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 239
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.55
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 126 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 230
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 335 SFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNP 505
+F +R S A SS + P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 582 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII 701
K+LY++ ++ GG +PG A +++ I + + I +I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVI 566
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 126 PCSRCTRPVVPPVSCWTPATVSPTPCPST 212
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 422 RSLTNFPTV-RSSLSETKDSVAQRLSSNPRLGYGS 523
RSL N+ T+ R+ LS D + LSS R+G GS
Sbjct: 510 RSLQNYGTLTRTDLSNIYDRYHEVLSSKHRVGLGS 544
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 102 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 209
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 23 LLTEAPLNPKANREKMTQIMFETFN 97
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 459 SDDLTVGKFVRLLEGAAGCSGGHFLLEVKSDVAQLLL 349
+D VG+ L+ GAAG S GHF EV + + +LL
Sbjct: 350 ADSTFVGRAASLV-GAAGQSQGHF-TEVLNGIGTILL 384
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 37 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 186
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3
Query: 120 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*RSRPHRLP-HED 287
S+ S T P PP + T PA SP P P +T+ P P+ T R P + P H +
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHP-PTASGT-RVPPVQQPSHPN 955
Query: 288 PH 293
P+
Sbjct: 956 PY 957
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,420
Number of Sequences: 5004
Number of extensions: 75327
Number of successful extensions: 315
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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