Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30066
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 28 1.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.2
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 27 3.0
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 27 3.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.0
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 3.0
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 3.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.9
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 3.9
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 26 5.2
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 574 VPRLDYERYAGRPSAAQQDGGYGTPSELSHSPSIMGHCSAGVQNLEF 434
V RLDY + G + DG YGT S + C G+ ++
Sbjct: 76 VVRLDYLGFGGWSGVQKNDGKYGTASTCQDNTYCSYACKPGMSKTQW 122
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 455 RGAESGIWMCSRSFLAGVPGLTFPVDEALRSWS 357
R ESG S++ + GV L F D+ LR W+
Sbjct: 175 RFLESGFLRLSKNLVPGVISLLFSRDDELRRWA 207
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 337 GCGGKAWDQLRSASSTGKVNPGTP 408
G G W L+S TGK N G P
Sbjct: 216 GYGATVWSPLKSGILTGKYNDGIP 239
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 389 FPVDEALRSWSHAFPPHPT-LRCFRHVSEHGVFEHRRHCYRIRSG 258
FP E + SWSH P H T + H + + C+ +R G
Sbjct: 116 FPPKEDIYSWSHHTPLHKTKVILLGQDPYHNIGQAHGLCFSVRPG 160
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 537 RLPPSRMADMAHPPSSPTHRLSWDTALPGCRIWNLDVQPEFS 412
RLP S + H +P+H+ +DTA + + + P F+
Sbjct: 972 RLPISPLPPQLHKTGTPSHQHGFDTAETTAKQYAPSIPPNFN 1013
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 373 ASSTGKVNPGTPARKLRLHIQIPDSAPRQSSV 468
AS+ G V P+ R+H +P+SAP S+
Sbjct: 555 ASNLGDVGLRLPSPSPRIHTIVPNSAPEHPSI 586
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 567 DSTTSGTPAGRLPPSRMADMAHPPSSPTHRLS 472
D + TP G L S + AHPP H+ S
Sbjct: 34 DLSGLNTPVGELATSNLPSPAHPPFGELHQES 65
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 435 NSRFCTPAEQCPMIDG-EWESSEGVPYPPSCW-AADG 539
+S +C + CP+IDG ++ S G Y PS + +DG
Sbjct: 889 SSYYCDNDQLCPIIDGVDYLSCNGACYNPSQYVCSDG 925
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 294 KNTVFTNVAETPEGGVWWEGMGPAPERLVDWKGQPWD 404
K+ +F +A + WW+ + P+PE+ W D
Sbjct: 400 KDEIFKQIAFSVVEKAWWKMLLPSPEQWNSWPSSSRD 436
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -2
Query: 479 VYHGTLLCRGAESGIWMCSRSFLAGVPGLTFPVDEALRSWSH--AFPPHPTLRCF-RHVS 309
V++ L + +W S+ +L GV + +P E W+ A+ H F + V
Sbjct: 404 VWYRRLARKRNPEAMWKLSQFYLNGVDDVIYPNPELANEWAKAAAYKNHHLASTFVQDVG 463
Query: 308 EHGVFE 291
+ VFE
Sbjct: 464 KEDVFE 469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,638,512
Number of Sequences: 5004
Number of extensions: 83651
Number of successful extensions: 251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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