Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30066
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...   145   5e-37
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.59 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.5  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   7.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   9.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   9.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score =  145 bits (351), Expect = 5e-37
 Identities = 64/73 (87%), Positives = 68/73 (93%)
 Frame = +1

Query: 37  IVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDKDGVLRAI 216
           I+ ITNP+GKKRYI AAFPSACGKTNLAMM PTLPGYK+ECVGDDIAWMKFDK+G LRAI
Sbjct: 1   ILAITNPKGKKRYITAAFPSACGKTNLAMMKPTLPGYKIECVGDDIAWMKFDKEGRLRAI 60

Query: 217 NPENGFFGVAPGT 255
           NPE GFFGVAPGT
Sbjct: 61  NPEYGFFGVAPGT 73



 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +3

Query: 255 SAATNPIAMATVFKNTVFTNVAETPEGGVWWEGM 356
           S+ATNP AM T+FKNT+FTNVA T +GG++WEG+
Sbjct: 74  SSATNPNAMKTIFKNTIFTNVASTSDGGIFWEGL 107


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 275 SNGDGVQKHRVH*RGGNT*GWGVVGRHGTSSGAPRRLERSTLG 403
           +N DG ++  ++        WGV+   G   G PR      LG
Sbjct: 598 ANTDGTEEDALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLG 640


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 320 RHVSEHGVFEHRRHCYRIRSG*VPGATPKNPFSGL 216
           R+ + H  F +R H Y    G V G    N  SGL
Sbjct: 605 RYAAPHKAFTYRMHGYASVVGPVKGIYQHNVASGL 639


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 236 LELHQVLSRYESDSNGDGV 292
           L ++QV  R   DSNGDG+
Sbjct: 30  LIVYQVYPRSFKDSNGDGI 48


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 236 LELHQVLSRYESDSNGDGV 292
           L ++QV  R   DSNGDG+
Sbjct: 30  LIVYQVYPRSFKDSNGDGI 48


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 115 LAMMTPTLPGYKVECVGDDI 174
           + M+T TLPG  V   GD+I
Sbjct: 370 IVMLTLTLPGIGVVYNGDEI 389


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 348 PTTPHPQVFPP 316
           P+TP PQ  PP
Sbjct: 155 PSTPFPQFIPP 165


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 123 DDANTARVQSRVRGGRHSLDEVRQGRRT 206
           DD N   +QS V   +   DE+ + +RT
Sbjct: 32  DDENCETLQSEVHITKDEYDEIGRLKRT 59


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 428 TSKFQILHPGRAV 466
           +  FQILH GRA+
Sbjct: 193 SESFQILHAGRAL 205


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 428 TSKFQILHPGRAV 466
           +  FQILH GRA+
Sbjct: 193 SESFQILHAGRAL 205


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 428 TSKFQILHPGRAV 466
           +  FQILH GRA+
Sbjct: 193 SESFQILHAGRAL 205


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 123 DDANTARVQSRVRGGRHSLDEVRQGRRT 206
           DD N   +QS V   +   DE+ + +RT
Sbjct: 32  DDENCETLQSEVHITKDEYDEIGRLKRT 59


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/47 (23%), Positives = 17/47 (36%)
 Frame = +3

Query: 294 KNTVFTNVAETPEGGVWWEGMGPAPERLVDWKGQPWDPSKKTPAAHP 434
           K  + T  ++ P  G       P        +G P +PS+  P   P
Sbjct: 5   KQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 543 AGRLPPSRMADMAHPPSSPTHR 478
           AG LPPS      HP     HR
Sbjct: 309 AGFLPPSYHPHQHHPSQYHPHR 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,079
Number of Sequences: 438
Number of extensions: 6299
Number of successful extensions: 28
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)