Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30066
(768 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g34855.1 68418.m04092 hypothetical protein 35 0.069
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 34 0.091
At4g04130.1 68417.m00583 Ulp1 protease family protein contains P... 34 0.12
At3g17120.2 68416.m02185 expressed protein 32 0.48
At3g17120.1 68416.m02184 expressed protein 32 0.48
At5g28500.1 68418.m03469 expressed protein predicted proteins, A... 31 0.85
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 1.1
At3g06840.1 68416.m00811 expressed protein 30 1.5
At3g04550.1 68416.m00483 expressed protein 30 2.0
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 29 2.6
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 29 2.6
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 29 3.4
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 29 3.4
At5g15890.1 68418.m01859 expressed protein 29 4.5
At1g48490.1 68414.m05420 protein kinase, putative similar to inc... 29 4.5
At5g44640.1 68418.m05470 glycosyl hydrolase family 1 protein con... 28 6.0
At5g42260.1 68418.m05144 glycosyl hydrolase family 1 protein con... 28 6.0
At4g18740.2 68417.m02770 expressed protein 28 6.0
At4g18740.1 68417.m02769 expressed protein 28 6.0
At2g44450.1 68415.m05527 glycosyl hydrolase family 1 protein con... 28 6.0
At5g36890.1 68418.m04419 glycosyl hydrolase family 1 protein pco... 28 7.9
At4g07500.1 68417.m01161 hypothetical protein 28 7.9
At4g05210.1 68417.m00785 bacterial transferase hexapeptide repea... 28 7.9
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 28 7.9
>At5g34855.1 68418.m04092 hypothetical protein
Length = 425
Score = 34.7 bits (76), Expect = 0.069
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -1
Query: 543 AGRLPPSRMADMAHPPSSPTHRLSW----DTALPGCRIWNLDVQPEFS 412
A L PS+ A P P HR W + +P R+W DV EF+
Sbjct: 30 AASLLPSQPESQAAAPQPPVHRFPWPKLPNERIPSQRVWEKDVNKEFT 77
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 34.3 bits (75), Expect = 0.091
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 357 GPAPE-RLVDWKGQPWDPSKKTPAAHPNSRFCTPAEQCPMIDGEWESSEGVPYPP 518
GPAP R DW P++ PA P+ +P+E+ P + +S G P PP
Sbjct: 88 GPAPNPRSYDWLAPASSPNEP-PAETPDESSPSPSEETPSVVAPSQSVPGPPRPP 141
>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At2g11345, At3g42690
Length = 1200
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 435 LDVQPEFSCWGPRVDLSSRRGAPELVPCLPTTPHPQVFP 319
+D +P + P +DL +R G+P PC P TP QV P
Sbjct: 665 MDTKPIKTMEEP-LDLGNRAGSPRQTPCSPVTPIAQVIP 702
>At3g17120.2 68416.m02185 expressed protein
Length = 219
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -3
Query: 553 RYAGRPSAAQQDGGYGTPSELSHSPSIMGHCSAGVQN 443
+YAG PSA++ DGGY P L+ P+++ S G++N
Sbjct: 179 QYAGNPSASEPDGGYTGP-VLAQRPNLLKPVS-GLEN 213
>At3g17120.1 68416.m02184 expressed protein
Length = 219
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -3
Query: 553 RYAGRPSAAQQDGGYGTPSELSHSPSIMGHCSAGVQN 443
+YAG PSA++ DGGY P L+ P+++ S G++N
Sbjct: 179 QYAGNPSASEPDGGYTGP-VLAQRPNLLKPVS-GLEN 213
>At5g28500.1 68418.m03469 expressed protein predicted proteins,
Arabidopsis thaliana and Synechocystis sp.
Length = 434
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 678 GRIANGSCITILPLCSAAAVASDLMEAPM 592
G +A S + +LP+C A L+EAPM
Sbjct: 281 GEVAGASSVVVLPVCKAEEGEEKLLEAPM 309
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = -3
Query: 544 GRPSAAQQDG-GYGTPSELSHSPSIMGHCSAGVQNLEFGCAAGVFLLGSQG*PFQSTRRS 368
G P QQ G G P + H P G+ V + G + Q P RRS
Sbjct: 438 GAPGLGQQIFYGQGPPPIIPHQPGF-GYQPQLVPGMRPAFFGGPMMQPGQQGPRPGGRRS 496
Query: 367 GAGPMPSHHTPP 332
G GPM H P
Sbjct: 497 GDGPMRHQHQQP 508
>At3g06840.1 68416.m00811 expressed protein
Length = 187
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 675 RIANGSCITILPLCSAAAVASDLMEAPMNTPCCQSRDSTTSGTPAGRLPPSRMADMAHP 499
R+ N +T S A++ + + NTP + +SG AG L P+R D+A P
Sbjct: 103 RVRNFRSVTGSMSMSGPIYATESLISGSNTPYRTTTSKPSSGPIAGTLTPARKGDVAIP 161
>At3g04550.1 68416.m00483 expressed protein
Length = 449
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 684 KNGRIANGSCITILPLCSAAAVASDLMEAPM 592
K G +A + + +LP+C A ++EAPM
Sbjct: 294 KFGEVAEATSVVVLPVCKAEEGEKKILEAPM 324
>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 162
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 642 PLCSAAAVASDLMEAPMNTPCCQSRDSTTSGTPAG--RLPPSRMADMAHPPSSPTHRLSW 469
P S AA + EAP TP ++ S TPA ++ P + A PS+P S
Sbjct: 44 PAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSAPEIAPSA 103
Query: 468 DTALP 454
D P
Sbjct: 104 DVPAP 108
>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 185
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 642 PLCSAAAVASDLMEAPMNTPCCQSRDSTTSGTPAG--RLPPSRMADMAHPPSSPTHRLSW 469
P S AA + EAP TP ++ S TPA ++ P + A PS+P S
Sbjct: 44 PAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSAPEIAPSA 103
Query: 468 DTALP 454
D P
Sbjct: 104 DVPAP 108
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = -1
Query: 687 PKNGRIANGSCITILPLCSAAAVASDLMEAPMNTPCCQSRDSTTSGTPAGRLPPSRMADM 508
P G NG + + L AAA + +P +TP S +T TP+ P
Sbjct: 103 PTFGHCKNGMKLAVPVL--AAAPSPSTPSSPPSTPSTPSSPPSTPSTPSSPPSPPSPPSP 160
Query: 507 AHPPSS 490
+ PPSS
Sbjct: 161 SLPPSS 166
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 600 APMNTPCCQSRDSTTSGTPAGRLPPSRMADMAHPPSSPT 484
+P +TP S + P+ LPPS + A PP++ T
Sbjct: 140 SPPSTPSTPSSPPSPPSPPSPSLPPSSLPPSASPPTNGT 178
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 324 TPEGGVWWEG-MGPAPERLVDWKGQPWD 404
T EGG WWEG + + + D+ PW+
Sbjct: 1423 TGEGGAWWEGRIESSQVKSTDFPESPWE 1450
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +3
Query: 402 DPSKKTPAAHPNSRFCTPAEQCPMIDGEWESSEGVPY--PPSCWA 530
D S + +R + C + GEW +E PY +CWA
Sbjct: 166 DHSSPVTTSPSRTRIRDDEQMCDLFTGEWVPNEEAPYYTNTTCWA 210
>At1g48490.1 68414.m05420 protein kinase, putative similar to
incomplete root hair elongation (IRE) [Arabidopsis
thaliana] gi|6729346|dbj|BAA89783
Length = 878
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 453 GCRIWNLDVQPEFSCWGPRVDLSSRRGAPELVPCLPTT 340
G +I N + E P++ SRRG+ +++ C P T
Sbjct: 259 GMKISNASLTEELDVLSPKLSDWSRRGSEDMLDCFPET 296
>At5g44640.1 68418.m05470 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Non-cyanogenic beta-glucosidase precursor
(SP:P26204) [Trifolium repens]
Length = 507
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 692 NFGDYLKHWLSMPQPGT 742
NFGD +KHW+++ +P T
Sbjct: 187 NFGDRVKHWMTLNEPLT 203
>At5g42260.1 68418.m05144 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to amygdalin hydrolase isoform AH I precursor
(GI:16757966) [Prunus serotina]
Length = 507
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 692 NFGDYLKHWLSMPQPGT 742
NFGD +KHW+++ +P T
Sbjct: 187 NFGDRVKHWMTLNEPLT 203
>At4g18740.2 68417.m02770 expressed protein
Length = 214
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 576 QSRDSTTSGTPAGRLPPSRMADMAHPPSSPTHRLSWDTALPGCR 445
+SR T T PP R ++ PPSS R ++ G R
Sbjct: 142 KSRKKTEGDTSVKEKPPKRQVELPRPPSSFVKRTPLSSSASGPR 185
>At4g18740.1 68417.m02769 expressed protein
Length = 245
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 576 QSRDSTTSGTPAGRLPPSRMADMAHPPSSPTHRLSWDTALPGCR 445
+SR T T PP R ++ PPSS R ++ G R
Sbjct: 142 KSRKKTEGDTSVKEKPPKRQVELPRPPSSFVKRTPLSSSASGPR 185
>At2g44450.1 68415.m05527 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to amygdalin hydrolase isoform AH I precursor
(GI:16757966) [Prunus serotina]
Length = 506
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 692 NFGDYLKHWLSMPQPGT 742
NFGD +KHW+++ +P T
Sbjct: 187 NFGDRVKHWMTLNEPLT 203
>At5g36890.1 68418.m04419 glycosyl hydrolase family 1 protein
pcontains Pfam PF00232 : Glycosyl hydrolase family 1
domain; similar to amygdalin hydrolase isoform AH I
precursor (GI:16757966) [Prunus serotina]; prunasin
hydrolase isoform PHA precursor, Prunus serotina,
EMBL:AF221526
Length = 490
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 692 NFGDYLKHWLSMPQP 736
NFGD +KHW+++ +P
Sbjct: 170 NFGDRVKHWITLNEP 184
>At4g07500.1 68417.m01161 hypothetical protein
Length = 239
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -1
Query: 549 TPAGRLPPSRMADMAHPPSSPTHRLSWDTA----LPGCRIWNLDVQPEFS 412
T AG P A +A P P +R W + +P R+W D+ EF+
Sbjct: 11 TAAGLRPSQPEAPVA-APLPPIYRFPWPISPKEKIPSQRVWEKDINREFT 59
>At4g05210.1 68417.m00785 bacterial transferase hexapeptide
repeat-containing protein similar to SP|P32203
UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase (EC 2.3.1.-) {Yersinia
enterocolitica}; contains Pfam profile PF00132:
Bacterial transferase hexapeptide (three repeats)
Length = 299
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 335 TLRCFRHVSEHGVFEHRRHCYRIR 264
+LR VS HGVF ++R YR+R
Sbjct: 4 SLRTLFSVSTHGVFLNKRSSYRVR 27
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 654 ITILPLCSAAAVASDLMEAPMNTPCCQSRDSTTSGTPAGRLPPSRMADMAHPPSSPTHR 478
+ +LP + + V++ A N PCC S+ + T G L + PP SP ++
Sbjct: 184 LRVLPPENVSGVSASPSPAAKN-PCCLFCSSSPTSTLLGNLSHLSRSPSLSPPMSPANK 241
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,167,321
Number of Sequences: 28952
Number of extensions: 496119
Number of successful extensions: 1709
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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