Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30065
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.4  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    27   3.3  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   5.8  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   5.8  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.6  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 610 PDRRFFAL*RWSPRSLIVDSCSK 542
           PD +FF +  W P  L + SC K
Sbjct: 220 PDAKFFGIFDWDPHGLCIYSCFK 242


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 613 RPDRRFFAL*RWSPRSLIVDSCSKLEQHSTLSRSXXXXIRDF 488
           +P  RFF    + P+S  +D  ++  QH  +SR     I++F
Sbjct: 205 KPKNRFFFDGNYLPKSDALDIIAQCHQHWKVSRDRKQYIKNF 246


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 44  LTIYFDRLIKFIQHKTSNWFGRSLKTLAV*Q*SN*IWKCFISMSNMKKKTRGG 202
           LTI  D ++KF++H +S +    L  +   +  N + K  +   N   +  GG
Sbjct: 605 LTIIADEVVKFVEHYSSTFDQELLNLINDEKWQNFVNKTLVETRNRDNQLLGG 657


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 393 PFXCATVGKGDRCGPXRYYASWRKGDV 313
           P  C  V  G R GP   Y +W+  DV
Sbjct: 392 PKVCLFVRNGARLGPTSIYHAWKAFDV 418


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 38  MDLTIYFDRLIKFIQHKTSNW 100
           +D  + F+RL+  IQ+KTSN+
Sbjct: 243 VDTGMGFERLVSVIQNKTSNY 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,521
Number of Sequences: 5004
Number of extensions: 51301
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)