Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30065
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353...    29   4.5  
05_03_0258 - 11153709-11156090                                         28   6.0  
03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083     28   6.0  
06_01_0092 - 775290-775691                                             28   7.9  

>01_07_0064 +
           40834649-40834786,40834934-40834997,40835333-40835391,
           40835602-40835677,40835775-40835846,40837641-40837728,
           40838239-40838497,40838766-40839000,40839447-40839470,
           40839910-40839997,40840110-40840300,40841082-40841322,
           40841803-40842556
          Length = 762

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 500 YKGFCRXRPIGXKMS*FNKNXTRILTKYXRL 408
           Y GF + R +    S F KN T  LTK+ ++
Sbjct: 418 YSGFLKNREMDVDQSKFKKNQTEFLTKFDQI 448


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 421 NIXAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 287
           N+  YNL F +  +   + R      +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083
          Length = 180

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 567 ERGLQRQRAKNRLSGRWPTT*NHHPNQVF 653
           E    RQR  +R SGRW    NH  N  F
Sbjct: 112 ETARNRQRVSHRRSGRWRWMQNHDNNTTF 140


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 355 RASSLLRQLAKGGCAARR 302
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,377,495
Number of Sequences: 37544
Number of extensions: 345435
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)