Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30064
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 85 6e-17
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 85 6e-17
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 84 1e-16
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 60 2e-09
07_03_1358 - 25984897-25984997,25985623-25985650 47 2e-05
05_03_0258 - 11153709-11156090 31 0.95
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 30 2.2
06_03_0378 + 20070955-20071354,20071483-20072132 29 5.1
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 28 8.8
06_01_0092 - 775290-775691 28 8.8
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 85.0 bits (201), Expect = 6e-17
Identities = 37/56 (66%), Positives = 46/56 (82%)
Frame = +2
Query: 23 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 190
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLD 65
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 85.0 bits (201), Expect = 6e-17
Identities = 37/56 (66%), Positives = 46/56 (82%)
Frame = +2
Query: 23 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 190
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLD 281
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/54 (68%), Positives = 45/54 (83%)
Frame = +2
Query: 29 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 190
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLD 88
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = +2
Query: 23 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 178
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ L K R +
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQELLTLDEKNPRRI 61
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +2
Query: 23 FSKTYVTPRRPFEKARLDQELKIIGEYG 106
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>05_03_0258 - 11153709-11156090
Length = 793
Score = 31.1 bits (67), Expect = 0.95
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 414 NINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 280
N+N YNL F + + + R +L ++++ GC R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 56 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLEGGPGTQFA 214
FE A+ ++ KII E R+ ++ +KY LA A ELL L+ G +A
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQTALGQYYA 450
>06_03_0378 + 20070955-20071354,20071483-20072132
Length = 349
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 246 VVLNVVTGKTLALPNLIALQHIPL 317
++LN +TG+ +ALP +QH+ L
Sbjct: 101 ILLNPITGRRIALPPATTMQHVTL 124
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 602 LIDGFSPFDVGVHVL**WTLVPNWNNTQPYLVYSFD 495
+ID F + +G+ +L W + +W P+LVY D
Sbjct: 746 VIDLFCTWFLGLLLLKFWVKLVHWTTVTPFLVYFID 781
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 348 RASSLLRQLAKGGCAARR 295
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,039,415
Number of Sequences: 37544
Number of extensions: 424977
Number of successful extensions: 978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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